U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM335240v1

Organism name:
Haemophilus influenzae (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: M15895
BioSample:
SAMN09704905
BioProject:
PRJNA428178
Submitter:
Centers for Disease Control and Prevention
Date:
2018/08/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003352405.1 (latest)
RefSeq assembly accession:
GCF_003352405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
113.95x
Sequencing technology:
PacBio

IDs: 1839791 [UID] 6972488 [GenBank] 6991168 [RefSeq]

See Genome Information for Haemophilus influenzae

There are 1324 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/19/2023 01:21:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,921
CDSs (total)::1,841
Genes (coding)::1,783
CDSs (with protein)::1,783
Genes (RNA)::80
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::29 of 58
Pseudo Genes (incomplete)::31 of 58
Pseudo Genes (internal stop)::12 of 58
Pseudo Genes (multiple problems)::11 of 58
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,919,901
Total ungapped length1,919,901
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003352415.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031249.1=NZ_CP031249.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,919,901

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus influenzaeHaemophilus influenzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020736045.1Haemophilus influenzaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020736045.1Haemophilus influenzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.1986.4387.77
Best-match type95.1986.4387.77

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna