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ASM342552v1

Organism name:
Haemophilus influenzae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: P642-4396
BioSample:
SAMN07421919
BioProject:
PRJNA282520
Submitter:
Institute of Agrobiotechnology
Date:
2018/08/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003425525.1 (latest)
RefSeq assembly accession:
GCF_003425525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3.0
Expected final version:
yes
Genome coverage:
156x
Sequencing technology:
PacBio RSII

IDs: 1884141 [UID] 7135218 [GenBank] 7213378 [RefSeq]

See Genome Information for Haemophilus influenzae

There are 1333 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003425525.1-RS_2024_03_30
Annotation Date::03/30/2024 02:55:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,905
CDSs (total)::1,823
Genes (coding)::1,758
CDSs (with protein)::1,758
Genes (RNA)::82
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::65
CDSs (without protein)::65
Pseudo Genes (ambiguous residues)::0 of 65
Pseudo Genes (frameshifted)::28 of 65
Pseudo Genes (incomplete)::42 of 65
Pseudo Genes (internal stop)::16 of 65
Pseudo Genes (multiple problems)::17 of 65
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,897,311
Total ungapped length1,897,311
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003425535.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031686.1=NZ_CP031686.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,897,311

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus influenzaeHaemophilus influenzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457655.1Haemophilus influenzaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457655.1Haemophilus influenzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7093.3493.67
Best-match type97.7093.3493.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna