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ASM342692v1

Organism name:
Urocitellus parryii (Arctic ground squirrel)
Infraspecific name:
Ecotype: Arctic tundra
Isolate:
AGS 11-09-20
Sex:
male
BioSample:
SAMN09469529
BioProject:
PRJNA477386
Submitter:
UAF
Date:
2018/08/24
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003426925.1 (latest)
RefSeq assembly accession:
GCF_003426925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVIC01
Assembly method:
AllPaths v. September 2017
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
Illumina HiSeq

IDs: 1905031 [UID] 7141158 [GenBank] 7338718 [RefSeq]

See Genome Information for Urocitellus parryii

History (Show revision history)

Comment

Global statistics

Total sequence length2,520,505,282
Total ungapped length2,255,941,180
Gaps between scaffolds0
Number of scaffolds15,884
Scaffold N503,964,291
Scaffold L50175
Number of contigs79,883
Contig N5091,013
Contig L506,919
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15,884

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,520,505,28215,8842,255,941,1803,964,29163,9990