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ASM348036v1

Organism name:
Butyricicoccus sp. AM32-19 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM32-19
BioSample:
SAMN09736440
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003480365.1 (latest)
RefSeq assembly accession:
GCF_003480365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUIX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930551 [UID] 7310228 [GenBank] 7364698 [RefSeq]

See Genome Information for Butyricicoccus sp. AM32-19

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 00:52:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,994
CDS (total)::2,930
Genes (coding)::2,827
CDS (coding)::2,827
Genes (RNA)::64
rRNAs::2, 1 (5S, 16S)
complete rRNAs::2, 1 (5S, 16S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::103
Pseudo Genes (ambiguous residues)::6 of 103
Pseudo Genes (frameshifted)::33 of 103
Pseudo Genes (incomplete)::68 of 103
Pseudo Genes (internal stop)::14 of 103
Pseudo Genes (multiple problems)::15 of 103
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,041,364
Total ungapped length3,041,134
Gaps between scaffolds0
Number of scaffolds45
Scaffold N50136,052
Scaffold L506
Number of contigs68
Contig N50106,886
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,041,364453,041,134136,052230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyricicoccus sp. AM32-19Butyricicoccus sp. AM32-19

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648015.1Butyricicoccus faecihoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.5581.4082.68

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna