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ASM357093v1

Organism name:
Candidatus Cryosericum odellii (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SMC5
BioSample:
SAMN09710623
BioProject:
PRJNA482249
Submitter:
The Ohio State University
Date:
2018/09/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003570935.1 (latest)
RefSeq assembly accession:
GCF_003570935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QXIU01
Assembly method:
CLC Genomics Workbench v. 4.4
Expected final version:
yes
Genome coverage:
5x
Sequencing technology:
Illumina HiSeq

IDs: 1980311 [UID] 7449278 [GenBank] 7456488 [RefSeq]

See Genome Information for Candidatus Cryosericum odellii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/05/2018 14:46:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,076
CDS (total)::2,037
Genes (coding)::1,966
CDS (coding)::1,966
Genes (RNA)::39
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::34
ncRNAs::4
Pseudo Genes (total)::71
Pseudo Genes (ambiguous residues)::24 of 71
Pseudo Genes (frameshifted)::40 of 71
Pseudo Genes (incomplete)::20 of 71
Pseudo Genes (internal stop)::1 of 71
Pseudo Genes (multiple problems)::14 of 71
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,985,677
Total ungapped length1,981,129
Gaps between scaffolds0
Number of scaffolds268
Scaffold N509,936
Scaffold L5057
Number of contigs344
Contig N508,336
Contig L5068
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)268

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,985,6772681,981,1299,936760

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Cryosericum odelliiCandidatus Cryosericum odellii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003852895.1Albitalea terraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type75.600.060.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena