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ASM366762v1

Organism name:
Geobacillus stearothermophilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FHS-PPGT111
BioSample:
SAMN10227542
BioProject:
PRJNA496304
Submitter:
Korea University
Date:
2018/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003667625.1 (latest)
RefSeq assembly accession:
GCF_003667625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RCTI01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
470.4x
Sequencing technology:
Illumina MiSeq

IDs: 2023721 [UID] 7611078 [GenBank] 7618268 [RefSeq]

See Genome Information for Geobacillus stearothermophilus

There are 67 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/15/2018 14:51:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,357
CDS (total)::3,230
Genes (coding)::2,811
CDS (coding)::2,811
Genes (RNA)::127
rRNAs::12, 11, 11 (5S, 16S, 23S)
complete rRNAs::10 (5S)
partial rRNAs::2, 11, 11 (5S, 16S, 23S)
tRNAs::88
ncRNAs::5
Pseudo Genes (total)::419
Pseudo Genes (ambiguous residues)::0 of 419
Pseudo Genes (frameshifted)::124 of 419
Pseudo Genes (incomplete)::312 of 419
Pseudo Genes (internal stop)::60 of 419
Pseudo Genes (multiple problems)::68 of 419
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,886,901
Total ungapped length2,886,801
Gaps between scaffolds0
Number of scaffolds327
Scaffold N5033,321
Scaffold L5024
Number of contigs328
Contig N5033,321
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)327

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,886,9013272,886,80133,32110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Geobacillus stearothermophilusGeobacillus stearothermophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030369615.1Geobacillus stearothermophilus ATCC 12980type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030369615.1Geobacillus stearothermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2386.7687.54
Best-match type99.2386.7687.54

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna