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Source database (GenBank or RefSeq) File type

Obir_v5.4

Organism name:

Ooceraea biroi (clonal raider ant)

Isolate:

clonal line C1

BioSample:

SAMN09281275

BioProject:

PRJNA420369

Submitter:

The Rockefeller University

Date:

2018/10/23

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003672135.1 (latest)

RefSeq assembly accession:

GCF_003672135.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

QOIP01

Assembly method:

Canu v. 1.1; Quickmerge v. APRIL-2017; Lachesis v. JAN-2018

Expected final version:

yes

Genome coverage:

100.0x

Sequencing technology:

PacBio; Oxford Nanopore; Illumina NextSeq

IDs: 2027291 [UID] 7620928 [GenBank] 7654158 [RefSeq]

See Genome Information for Ooceraea biroi

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003672135.1	≠	GCF_003672135.1	Obir_v5.4	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	223,876,465
Total ungapped length	223,836,865
Gaps between scaffolds	0
Number of scaffolds	139
Scaffold N50	16,888,278
Scaffold L50	6
Number of contigs	535
Contig N50	3,735,272
Contig L50	19
Total number of chromosomes and plasmids	14
Number of component sequences (WGS or clone)	139

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM010856.1	=	NC_039506.1	0
Chromosome 2	CM010857.1	=	NC_039507.1	0
Chromosome 3	CM010858.1	=	NC_039508.1	0
Chromosome 4	CM010859.1	=	NC_039509.1	0
Chromosome 5	CM010860.1	=	NC_039510.1	0
Chromosome 6	CM010861.1	=	NC_039511.1	0
Chromosome 7	CM010862.1	=	NC_039512.1	0
Chromosome 8	CM010863.1	=	NC_039513.1	0
Chromosome 9	CM010864.1	=	NC_039514.1	0
Chromosome 10	CM010865.1	=	NC_039515.1	0
Chromosome 11	CM010866.1	=	NC_039516.1	0
Chromosome 12	CM010867.1	=	NC_039517.1	0
Chromosome 13	CM010868.1	=	NC_039518.1	0
Chromosome 14	CM010869.1	=	NC_039519.1	0
unplaced	n/a	n/a	n/a	125

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	223,876,465	139	223,836,865	16,888,278	396
Chromosome 1	24,609,146	1	24,607,746	24,609,146	14
Chromosome 2	19,224,430	1	19,222,530	19,224,430	19
Chromosome 3	18,309,999	1	18,307,799	18,309,999	22
Chromosome 4	17,779,965	1	17,778,165	17,779,965	18
Chromosome 5	17,453,326	1	17,452,126	17,453,326	12
Chromosome 6	16,888,278	1	16,886,978	16,888,278	13
Chromosome 7	16,599,821	1	16,599,021	16,599,821	8
Chromosome 8	15,891,175	1	15,888,475	15,891,175	27
Chromosome 9	15,673,213	1	15,670,013	15,673,213	32
Chromosome 10	13,842,897	1	13,839,597	13,842,897	33
Chromosome 11	13,721,257	1	13,719,957	13,721,257	13
Chromosome 12	13,632,444	1	13,629,644	13,632,444	28
Chromosome 13	9,470,121	1	9,458,521	9,470,121	116
Chromosome 14	8,740,971	1	8,736,871	8,740,971	41
unplaced	2,039,422	125	2,039,422	19,568	0

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Download Assembly

Obir_v5.4

See Genome Information for Ooceraea biroi

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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