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Source database (GenBank or RefSeq) File type

Aci_jub_2

Organism name:

Acinonyx jubatus (cheetah)

Isolate:

Rico

Sex:

male

BioSample:

SAMN09699341

BioProject:

PRJNA482183

Submitter:

Felidae consortium

Date:

2018/10/22

Assembly type:

diploid

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_003709585.1 (latest)

RefSeq assembly accession:

GCF_003709585.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 3219 unplaced scaffolds
Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

QURD01

Assembly method:

Supernova v. 2.0

Expected final version:

yes

Genome coverage:

71.74x

Sequencing technology:

Illumina NovaSeq

IDs: 2052541 [UID] 7684408 [GenBank] 7760308 [RefSeq]

See Genome Information for Acinonyx jubatus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003709585.1	≠	GCF_003709585.1	Aci_jub_2	Scaffold	Latest GenBank, RefSeq suppressed

Comment

This is a diploid assembly. The contigs of the primary assembly are located in QURD01000001-QURD01003219. The alternative haploid contigs (haplotigs) are located in QURD01003220-QURD01006438.

Global statistics*

Total sequence length	2,384,834,280
Total ungapped length	2,374,131,028
Gaps between scaffolds	0
Number of scaffolds	3,219
Scaffold N50	48,500,042
Scaffold L50	15
Number of contigs	27,392
Contig N50	179,924
Contig L50	3,937
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	3,219

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Assembly

Genome Assembly

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Aci_jub_2

See Genome Information for Acinonyx jubatus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics*

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
haplotigs