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USU_Nmel_1.2

  • Anomalous assembly.
Organism name:
Nomia melanderi (Alkali bee)
Isolate:
Touchet_males
BioSample:
SAMN10185933
BioProject:
PRJNA494873
Submitter:
Utah State University
Date:
2018/11/02
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003710045.1 (replaced)
RefSeq assembly accession:
GCF_003710045.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
REGV01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina HiSeq

IDs: 2055031 [UID] 7695248 [GenBank] 15706798 [RefSeq]

See Genome Information for Nomia melanderi

History (Show revision history)

Comment

In June 2022 1232 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length325,881,203
Total ungapped length307,655,189
Gaps between scaffolds0
Number of scaffolds95,883
Scaffold N502,351,152
Scaffold L5039
Number of contigs109,762
Contig N5028,892
Contig L502,943
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95,883

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced325,881,20395,883307,655,1892,351,15213,8790