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ASM379828v1

Organism name:: Yersinia pseudotuberculosis (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: FDAARGOS_583
BioSample:: SAMN10228563
BioProject:: PRJNA231221
Submitter:: US Food and Drug Administration
Date:: 2018/11/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003798285.1 (latest)
RefSeq assembly accession:: GCF_003798285.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT v. 2.3.0, HGAP v. 3.0
Genome coverage:: 959.224949574468x
Sequencing technology:: PacBio; Illumina

IDs: 2111751 [UID] 7882968 [GenBank] 7921148 [RefSeq]

See Genome Information for Yersinia pseudotuberculosis

Pathogen Detection Resources

There are 329 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003798285.1	=	GCF_003798285.1	ASM379828v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::07/17/2023 01:52:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,125
CDSs (total)::4,008
Genes (coding)::3,866
CDSs (with protein)::3,866
Genes (RNA)::117
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::10
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::50 of 142
Pseudo Genes (incomplete)::112 of 142
Pseudo Genes (internal stop)::23 of 142
Pseudo Genes (multiple problems)::34 of 142
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,652,188
Total ungapped length	4,652,188
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP033709.1	=	NZ_CP033709.1
Plasmid unnamed	CP033708.1	=	NZ_CP033708.1

Molecule	Total Length
All	4,652,188
Chromosome	4,582,218
Plasmid unnamed	69,970

	ANI	Query coverage	Subject coverage
Declared type	99.45	94.72	95.58
Best-match type	99.45	94.72	95.58

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ASM379828v1

See Genome Information for Yersinia pseudotuberculosis

Pathogen Detection Resources

There are 329 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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