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ASM379842v1

Organism name:
Yersinia pseudotuberculosis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_581
BioSample:
SAMN10228561
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2018/11/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003798425.1 (latest)
RefSeq assembly accession:
GCF_003798425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.7
Genome coverage:
1140.60145647059x
Sequencing technology:
PacBio; Illumina

IDs: 2111821 [UID] 7883108 [GenBank] 7923388 [RefSeq]

See Genome Information for Yersinia pseudotuberculosis

There are 329 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/17/2023 01:51:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,640
CDSs (total)::4,521
Genes (coding)::4,357
CDSs (with protein)::4,357
Genes (RNA)::119
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::11
Pseudo Genes (total)::164
CDSs (without protein)::164
Pseudo Genes (ambiguous residues)::0 of 164
Pseudo Genes (frameshifted)::51 of 164
Pseudo Genes (incomplete)::129 of 164
Pseudo Genes (internal stop)::28 of 164
Pseudo Genes (multiple problems)::36 of 164
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,096,964
Total ungapped length5,096,964
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003798435.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP033713.1=NZ_CP033713.1
Plasmid unnamedCP033712.1=NZ_CP033712.1

Assembly statistics

MoleculeTotal
Length
All5,096,964
Chromosome 5,026,929
Plasmid unnamed70,035

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia pseudotuberculosisYersinia pseudotuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637475.1Yersinia pseudotuberculosissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637475.1Yersinia pseudotuberculosissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4487.4096.63
Best-match type99.4487.4096.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna