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ASM396646v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: E2865
BioSample:
SAMD00129668
BioProject:
PRJDB7170
Submitter:
National Institute of Animal Health
Date:
2018/07/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003966465.1 (latest)
RefSeq assembly accession:
GCF_003966465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS HGAP Assembly v. 3.0
Genome coverage:
161x
Sequencing technology:
PacBio RSII

IDs: 2181291 [UID] 8124938 [GenBank] 8151558 [RefSeq]

See Genome Information for Escherichia coli

There are 150056 assemblies for this organism

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History (Show revision history)

Comment

Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2020 15:32:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,123
CDSs (total)::5,984
Genes (coding)::5,698
CDSs (with protein)::5,698
Genes (RNA)::139
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::106
ncRNAs::11
Pseudo Genes (total)::286
CDSs (without protein)::286
Pseudo Genes (ambiguous residues)::0 of 286
Pseudo Genes (frameshifted)::143 of 286
Pseudo Genes (incomplete)::128 of 286
Pseudo Genes (internal stop)::65 of 286
Pseudo Genes (multiple problems)::44 of 286
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,007,923
Total ungapped length6,007,923
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003966475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP018808.1=NZ_AP018808.1
Plasmid pE2865-1AP018809.1=NZ_AP018809.1
Plasmid pE2865-2AP018810.1=NZ_AP018810.1
Plasmid pE2865-3AP018811.1=NZ_AP018811.1
Plasmid pE2865-4AP018812.1=NZ_AP018812.1

Assembly statistics

MoleculeTotal
Length
All6,007,923
Chromosome 5,678,205
Plasmid pE2865-199,498
Plasmid pE2865-292,186
Plasmid pE2865-375,799
Plasmid pE2865-462,235

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734955.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734955.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0668.8283.01
Best-match type97.0668.8283.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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