U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



mRhiFer1_v1.p

Organism name:
Rhinolophus ferrumequinum (greater horseshoe bat)
Isolate:
MPI-CBG mRhiFer1
Sex:
male
BioSample:
SAMN09948510
BioProject:
PRJNA489106
Submitter:
Vertebrate Genomes Project
Date:
2019/05/16
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_004115265.2 (replaced)
RefSeq assembly accession:
GCF_004115265.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
RXPC01
Assembly method:
FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve v. BspQI/BssSI 3.2.1; Salsa2 v. HiC 2.0; purge_haplotigs v. bit 7.10.2018; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; FALCON v. 5.1.1; freebayes v. 1.2.0; gEVAL manual curation v. 2018-09-07
Expected final version:
no
Genome coverage:
52.8x
Sequencing technology:
PacBio Sequel; 10X Genomics linked reads; Bionano Genomics 2 enzyme; Phase Genomics HiC

IDs: 13744431 [UID] 10111728 [GenBank] 17888038 [RefSeq]

See Genome Information for Rhinolophus ferrumequinum

Pathogen Detection Resources

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

This assembly represents the primary haplotype of the diploid genome Rhinolophus ferrumequinum and includes the chromosomes. The alternate haplotype sequences are in WGS project RXPD00000000.
In May 2019 the mitochondrial sequence (RXPC01000135) was added to this 01 version of RXPC00000000.
In ... November 2020 chromosome 1 was changed to chromosome X based on read mapping and homology evidence with other species, and the animal's gender was corrected to female  more

Global statistics

Total sequence length2,075,768,562
Total ungapped length2,068,222,471
Gaps between scaffolds0
Number of scaffolds134
Scaffold N5088,025,743
Scaffold L5011
Number of contigs289
Contig N5031,900,497
Contig L5022
Total number of chromosomes and plasmids28
Number of component sequences (WGS or clone)134

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004115285.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM014226.1=NC_046284.10
Chromosome 2CM014227.1=NC_046285.10
Chromosome 3CM014228.1=NC_046286.11
Chromosome 4CM014229.1=NC_046287.10
Chromosome 5CM014230.1=NC_046288.11
Chromosome 6CM014231.1=NC_046289.10
Chromosome 7CM014232.1=NC_046290.10
Chromosome 8CM014233.1=NC_046291.10
Chromosome 9CM014234.1=NC_046292.10
Chromosome 10CM014235.1=NC_046293.10
Chromosome 11CM014236.1=NC_046294.10
Chromosome 12CM014237.1=NC_046295.10
Chromosome 13CM014238.1=NC_046296.11
Chromosome 14CM014239.1=NC_046297.10
Chromosome 15CM014240.1=NC_046298.11
Chromosome 16CM014241.1=NC_046299.10
Chromosome 17CM014242.1=NC_046300.10
Chromosome 18CM014243.1=NC_046301.10
Chromosome 19CM014244.1=NC_046302.10
Chromosome 20CM014245.1=NC_046303.10
Chromosome 21CM014246.1=NC_046304.10
Chromosome 22CM014247.1=NC_046305.10
Chromosome 23CM014248.1=NC_046306.10
Chromosome 24CM014249.1=NC_046307.10
Chromosome 25CM014250.1=NC_046308.10
Chromosome 26CM014251.1=NC_046309.10
Chromosome 27CM014252.1=NC_046310.10
Chromosome 28CM014253.1=NC_046311.10
unplacedn/an/an/a102

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,075,768,5621342,068,222,47188,025,7431550
Chromosome 1Assembled molecule124,933,3781123,660,529124,933,378310
Chromosome 2Assembled molecule109,261,8891109,137,364109,261,88980
Chromosome 3AllAssembled moleculeUnlocalized scaffolds107,357,732104,300,7363,056,996211106,476,891103,419,8953,056,996104,300,736104,300,7363,056,99611110000
Chromosome 4Assembled molecule106,206,0461106,205,846106,206,04620
Chromosome 5AllAssembled moleculeUnlocalized scaffolds105,723,03188,025,74317,697,288211105,722,73388,025,54517,697,18888,025,74388,025,74317,697,288321000
Chromosome 6Assembled molecule101,153,5851101,153,185101,153,58540
Chromosome 7Assembled molecule100,276,4291100,036,807100,276,42950
Chromosome 8Assembled molecule97,569,473197,569,47397,569,47300
Chromosome 9Assembled molecule94,502,422194,373,33494,502,42290
Chromosome 10Assembled molecule92,464,824192,415,45792,464,82460
Chromosome 11Assembled molecule89,119,429187,645,65989,119,42990
Chromosome 12Assembled molecule83,956,141183,690,36083,956,14170
Chromosome 13AllAssembled moleculeUnlocalized scaffolds74,874,08271,409,5643,464,51821174,773,91471,409,4643,364,45071,409,56471,409,5643,464,518312000
Chromosome 14Assembled molecule73,406,552173,406,45373,406,55210
Chromosome 15AllAssembled moleculeUnlocalized scaffolds70,183,81751,055,83019,127,98721170,069,16250,998,29119,070,87151,055,83051,055,83019,127,987862000
Chromosome 16Assembled molecule67,738,280167,737,98067,738,28020
Chromosome 17Assembled molecule66,937,833166,904,76866,937,83320
Chromosome 18Assembled molecule62,623,004162,622,90462,623,00410
Chromosome 19Assembled molecule60,482,744159,625,38860,482,74420
Chromosome 20Assembled molecule57,783,881157,709,15157,783,88140
Chromosome 21Assembled molecule55,572,441154,332,56155,572,44150
Chromosome 22Assembled molecule53,307,308153,307,20853,307,30810
Chromosome 23Assembled molecule45,543,787145,538,21545,543,78730
Chromosome 24Assembled molecule44,817,474144,727,49044,817,47430
Chromosome 25Assembled molecule40,340,809140,257,49640,340,80950
Chromosome 26Assembled molecule30,135,795130,135,79530,135,79500
Chromosome 27Assembled molecule27,843,844127,663,91527,843,84420
Chromosome 28Assembled molecule16,664,288116,425,13416,664,28820
unplacedAssembled molecule14,988,24410214,897,2992,644,450160