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ASM411807v1

  • Anomalous assembly.
Organism name:
Vigna unguiculata (cowpea)
Infraspecific name:
Cultivar: IT97K-499-35
BioSample:
SAMN06674009
BioProject:
PRJNA381312
Submitter:
University of California, Riverside
Date:
2019/01/30
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_004118075.1 (replaced)
RefSeq assembly accession:
GCF_004118075.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
NBOW01
Assembly method:
CANU-Abruijn-FALCON v. 2017-2-1
Expected final version:
yes
Genome coverage:
91.0x
Sequencing technology:
PacBio; Bionano

IDs: 2226791 [UID] 8372728 [GenBank] 8401678 [RefSeq]

See Genome Information for Vigna unguiculata

There are 8 assemblies for this organism

See more

History (Show revision history)

Comment

In June 2022 6 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length519,066,764
Total ungapped length516,345,966
Gaps between scaffolds0
Number of scaffolds682
Scaffold N5041,684,185
Scaffold L506
Number of contigs750
Contig N5010,911,736
Contig L5016
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)682

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_004118105.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM014066.1=NC_040279.10
Chromosome 2CM014067.1=NC_040280.10
Chromosome 3CM014068.1=NC_040281.10
Chromosome 4CM014069.1=NC_040282.10
Chromosome 5CM014070.1=NC_040283.10
Chromosome 6CM014071.1=NC_040284.10
Chromosome 7CM014072.1=NC_040285.10
Chromosome 8CM014073.1=NC_040286.10
Chromosome 9CM014074.1=NC_040287.10
Chromosome 10CM014075.1=NC_040288.10
Chromosome 11CM014076.1=NC_040289.10
unplacedn/an/an/a670

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All518,914,349681516,193,55141,684,185680
Chromosome 142,129,361141,849,47642,129,36150
Chromosome 233,908,088133,637,88733,908,08860
Chromosome 365,292,630164,867,40965,292,63070
Chromosome 442,731,077142,477,97842,731,077110
Chromosome 548,746,289148,579,64048,746,28950
Chromosome 634,463,471134,340,34434,463,47160
Chromosome 740,876,636140,831,47240,876,63650
Chromosome 838,363,498138,274,29238,363,49840
Chromosome 943,933,251143,911,50043,933,25130
Chromosome 1041,327,797140,985,75641,327,79780
Chromosome 1141,684,185141,399,52141,684,18550
unplaced45,458,06667045,038,27686,23930
MoleculeTotal
Length
Chloroplast Pltd152,415