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ASM438219v2

Organism name:
Drosophila sechellia (flies)
Infraspecific name:
Strain: sech25
Sex:
male
BioSample:
SAMN06827992
BioProject:
PRJNA383250
Submitter:
University of California, Irvine
Date:
2019/04/16
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004382195.2 (latest)
RefSeq assembly accession:
GCF_004382195.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
NIFZ01
Assembly method:
WGS v. 8.3rc1; DBG2OLC v. 1; Quickmerge v. 0.1
Expected final version:
yes
Genome coverage:
115.0x
Sequencing technology:
PacBio

IDs: 12788281 [UID] 33410478 [GenBank] 33410498 [RefSeq]

See Genome Information for Drosophila sechellia

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

In May 2022 24 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length153,084,571
Total ungapped length153,080,771
Gaps between scaffolds0
Number of scaffolds378
Scaffold N5024,956,976
Scaffold L503
Number of contigs416
Contig N5019,907,079
Contig L504
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)378

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004382305.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM015602.1=NC_045949.10
Chromosome 2RCM015603.1=NC_045950.10
Chromosome 3LCM015604.1=NC_045951.10
Chromosome 3RCM015605.1=NC_045952.10
Chromosome 4CM015600.1=NC_045953.10
Chromosome XCM015601.1=NC_045954.10
unplacedn/an/an/a372

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All153,084,571378153,080,77124,956,976380
Chromosome 2L24,956,976124,956,57624,956,97640
Chromosome 2R21,536,224121,535,62421,536,22460
Chromosome 3L28,131,630128,131,13028,131,63050
Chromosome 3R30,464,902130,464,60230,464,90230
Chromosome 41,277,80511,277,7051,277,80510
Chromosome X22,909,512122,907,61222,909,512190
unplaced23,807,52237223,807,52277,90800