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ASM474511v1

Organism name:: Escherichia sp. E4930 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: E4930
BioSample:: SAMN07759788
BioProject:: PRJNA412557
Submitter:: The Hong Kong University of Science and Technology
Date:: 2019/04/08
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_004745115.1 (latest)
RefSeq assembly accession:: GCF_004745115.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PDHZ01
Assembly method:: Mira v. 3.9
Expected final version:: no
Genome coverage:: 80x
Sequencing technology:: Ion Torrent

IDs: 2545121 [UID] 9231618 [GenBank] 9264568 [RefSeq]

See Genome Information for Escherichia sp. E4930

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004745115.1	=	GCF_004745115.1	ASM474511v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria available from Prof.Lau lab at Hong Kong University of Science and Technology.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/12/2017 13:37:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,200
CDS (total)::5,089
Genes (coding)::4,796
CDS (coding)::4,796
Genes (RNA)::111
rRNAs::8, 8, 12 (5S, 16S, 23S)
complete rRNAs::8, 1, 1 (5S, 16S, 23S)
partial rRNAs::7, 11 (16S, 23S)
tRNAs::77
ncRNAs::6
Pseudo Genes (total)::293
Pseudo Genes (ambiguous residues)::0 of 293
Pseudo Genes (frameshifted)::165 of 293
Pseudo Genes (incomplete)::95 of 293
Pseudo Genes (internal stop)::72 of 293
Pseudo Genes (multiple problems)::36 of 293
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,034,848
Total ungapped length	5,034,848
Number of contigs	78
Contig N50	247,834
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	78

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	94.73	80.43	89.01

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ASM474511v1

See Genome Information for Escherichia sp. E4930

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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