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ASM474539v1

Organism name:
Escherichia sp. E2593 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: E2593
BioSample:
SAMN07759747
BioProject:
PRJNA412557
Submitter:
The Hong Kong University of Science and Technology
Date:
2019/04/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004745395.1 (latest)
RefSeq assembly accession:
GCF_004745395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDII01
Assembly method:
Mira v. 3.9
Expected final version:
no
Genome coverage:
80x
Sequencing technology:
Ion Torrent

IDs: 2545281 [UID] 9231938 [GenBank] 9264108 [RefSeq]

See Genome Information for Escherichia sp. E2593

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Prof.Lau lab at Hong Kong University of Science and Technology.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/12/2017 13:44:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,308
CDS (total)::5,209
Genes (coding)::3,950
CDS (coding)::3,950
Genes (RNA)::99
rRNAs::8, 8, 5 (5S, 16S, 23S)
complete rRNAs::8, 1, 1 (5S, 16S, 23S)
partial rRNAs::7, 4 (16S, 23S)
tRNAs::69
ncRNAs::9
Pseudo Genes (total)::1,259
Pseudo Genes (ambiguous residues)::0 of 1,259
Pseudo Genes (frameshifted)::1,139 of 1,259
Pseudo Genes (incomplete)::151 of 1,259
Pseudo Genes (internal stop)::87 of 1,259
Pseudo Genes (multiple problems)::111 of 1,259
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,090,848
Total ungapped length5,090,848
Number of contigs78
Contig N50173,826
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)78

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,090,848785,090,848173,82600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia sp. E2593Escherichia sp. E2593

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014836715.1Escherichia whittamiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.6977.6786.91

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna