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cibio_Scana_2019

Organism name:
Serinus canaria (Common canary)
Infraspecific name:
Ecotype: domestic yellow
Isolate:
sc_yellow_7_cibi
Sex:
male
BioSample:
SAMN12017177
BioProject:
PRJNA548289
Submitter:
CIBIO-InBIO
Date:
2019/07/29
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_007115625.1 (latest)
RefSeq assembly accession:
GCF_007115625.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for GenBank version
WGS Project:
VKJK01
Assembly method:
SOAPdenovo v. January-2019; HiRise v. April-2019
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq; PacBio RS; Chicago Sequencing; Dovetail Genomics; HiC Sequencing

IDs: 4119131 [UID] 12697758 [GenBank] 12984068 [RefSeq]

See Genome Information for Serinus canaria

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,071,655,236
Total ungapped length1,052,269,486
Gaps between scaffolds0
Number of scaffolds3,536
Scaffold N5079,047,965
Scaffold L505
Number of contigs44,198
Contig N5090,869
Contig L503,125
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)3,536

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,071,638,4263,5351,052,252,67679,047,96540,6620
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,810116,81016,81000