rGopEvg1_v1.p

Organism name:

Gopherus evgoodei (Goodes thornscrub tortoise)

Infraspecific name:

Ecotype: Sinaloan lineage

Sex:

male

BioSample:

SAMN03496275

BioProject:

PRJNA489103

Submitter:

Vertebrate Genomes Project

Date:

2019/07/25

Assembly type:

haploid (principal pseudohaplotype of diploid)

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_007399415.1 (latest)

RefSeq assembly accession:

GCF_007399415.2 (latest)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

VHHN01

Assembly method:

FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-01-31; VGP standard assembly pipeline v. 1.5

Expected final version:

no

Genome coverage:

58.0x

Sequencing technology:

PacBio Sequel I; 10X Genomics linked reads; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_007399395.1 (alternate pseudohaplotype of diploid)

IDs: 4056201 [UID] 12565578 [GenBank] 13197778 [RefSeq]