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Source database (GenBank or RefSeq) File type

ASM883128v1

This assembly has been replaced. See current version

Anomalous assembly.

Organism name:

Nymphaea colorata (pocket water lily)

Isolate:

Beijing-Zhang1983

BioSample:

SAMN12766378

BioProject:

PRJNA565347

Submitter:

Fujian Agriculture and Forestry University

Date:

2019/10/07

Assembly level:

Chromosome

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_008831285.1 (replaced)

RefSeq assembly accession:

GCF_008831285.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VYXN01

Assembly method:

CANU v. 1.3

Expected final version:

yes

Genome coverage:

124.0x

Sequencing technology:

PacBio RSII; Hi-C

IDs: 4791351 [UID] 14240358 [GenBank] 15140018 [RefSeq]

See Genome Information for Nymphaea colorata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008831285.2	≠	GCF_008831285.2	ASM883128v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_008831285.1	≠	GCF_008831285.1	ASM883128v1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

In July 2022 17 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	409,013,923
Total ungapped length	408,951,423
Gaps between scaffolds	0
Number of scaffolds	800
Scaffold N50	25,516,871
Scaffold L50	7
Number of contigs	1,425
Contig N50	2,136,418
Contig L50	45
Total number of chromosomes and plasmids	15
Number of component sequences (WGS or clone)	1,425

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM018369.1	=	NC_045138.1	0
Chromosome 2	CM018370.1	=	NC_045139.1	0
Chromosome 3	CM018371.1	=	NC_045140.1	0
Chromosome 4	CM018372.1	=	NC_045141.1	0
Chromosome 5	CM018373.1	=	NC_045142.1	0
Chromosome 6	CM018374.1	=	NC_045143.1	0
Chromosome 7	CM018375.1	=	NC_045144.1	0
Chromosome 8	CM018376.1	=	NC_045145.1	0
Chromosome 9	CM018377.1	=	NC_045146.1	0
Chromosome 10	CM018378.1	=	NC_045147.1	0
Chromosome 11	CM018379.1	=	NC_045148.1	0
Chromosome 12	CM018380.1	=	NC_045149.1	0
Chromosome 13	CM018381.1	=	NC_045150.1	0
Chromosome 14	CM018382.1	=	NC_045151.1	0
unplaced	n/a	n/a	n/a	785

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	408,396,728	799	408,334,228	25,516,871	625
Chromosome 1	44,612,865	1	44,609,765	44,612,865	31
Chromosome 2	36,266,568	1	36,264,768	36,266,568	18
Chromosome 3	30,884,114	1	30,879,214	30,884,114	49
Chromosome 4	27,693,492	1	27,688,892	27,693,492	46
Chromosome 5	27,336,409	1	27,331,209	27,336,409	52
Chromosome 6	26,301,438	1	26,298,438	26,301,438	30
Chromosome 7	25,516,871	1	25,509,271	25,516,871	76
Chromosome 8	25,082,955	1	25,077,455	25,082,955	55
Chromosome 9	25,178,754	1	25,176,854	25,178,754	19
Chromosome 10	24,868,339	1	24,867,039	24,868,339	13
Chromosome 11	24,319,297	1	24,314,397	24,319,297	49
Chromosome 12	23,035,089	1	23,032,689	23,035,089	24
Chromosome 13	17,999,189	1	17,992,589	17,999,189	66
Chromosome 14	12,577,093	1	12,574,693	12,577,093	24
unplaced	36,724,255	785	36,716,955	44,954	73

Assembly

Genome Assembly

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ASM883128v1

See Genome Information for Nymphaea colorata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear