U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM893113v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: ERL04-3476
BioSample:
SAMN10177961
BioProject:
PRJNA494713
Submitter:
United State Department of Agriculture
Date:
2019/10/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_008931135.1 (latest)
RefSeq assembly accession:
GCF_008931135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3.0
Expected final version:
yes
Genome coverage:
557x
Sequencing technology:
PacBio RSII

IDs: 4837771 [UID] 14356588 [GenBank] 14456938 [RefSeq]

See Genome Information for Escherichia coli

There are 264989 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/07/2023 05:16:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,756
CDSs (total)::5,620
Genes (coding)::5,295
CDSs (with protein)::5,295
Genes (RNA)::136
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::106
ncRNAs::8
Pseudo Genes (total)::325
CDSs (without protein)::325
Pseudo Genes (ambiguous residues)::0 of 325
Pseudo Genes (frameshifted)::126 of 325
Pseudo Genes (incomplete)::182 of 325
Pseudo Genes (internal stop)::71 of 325
Pseudo Genes (multiple problems)::46 of 325
Pseudo Genes (short protein)::4 of 325
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,727,332
Total ungapped length5,727,332
Total number of chromosomes and plasmids3

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008931155.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP032808.1=NZ_CP032808.1
Plasmid pERL04-3476-1CP032809.1=NZ_CP032809.1
Plasmid pERL04-3476-2CP032810.1=NZ_CP032810.1

Assembly statistics

MoleculeTotal
Length
All5,727,332
Chromosome 5,573,120
Plasmid pERL04-3476-192,771
Plasmid pERL04-3476-261,441

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001281725.1Escherichia colicladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281725.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9390.8698.20
Best-match type99.9390.8698.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna