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ASM965003v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: AUSMDU00014361
BioSample:
SAMN11008224
BioProject:
PRJNA556438
Submitter:
Microbiological Diagnostic Unit
Date:
2019/11/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_009650035.1 (latest)
RefSeq assembly accession:
GCF_009650035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8b
Expected final version:
yes
Genome coverage:
89.0x
Sequencing technology:
Oxford Nanopore GridION; Illumina NextSeq

IDs: 5321311 [UID] 15393328 [GenBank] 15410428 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265156 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Bacteria and source DNA availalbe from Microbiological Diagnostic Unit Public Health Laboratory, Victoria, Australia

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/10/2023 16:08:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,879
CDSs (total)::5,739
Genes (coding)::5,372
CDSs (with protein)::5,372
Genes (RNA)::140
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::107
ncRNAs::11
Pseudo Genes (total)::367
CDSs (without protein)::367
Pseudo Genes (ambiguous residues)::0 of 367
Pseudo Genes (frameshifted)::167 of 367
Pseudo Genes (incomplete)::200 of 367
Pseudo Genes (internal stop)::80 of 367
Pseudo Genes (multiple problems)::69 of 367
Pseudo Genes (short protein)::3 of 367
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,774,445
Total ungapped length5,774,445
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009650045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP045827.1=NZ_CP045827.1
Plasmid pAUSMDU00014361_01CP045828.1=NZ_CP045828.1
Plasmid pAUSMDU00014361_02CP045829.1=NZ_CP045829.1
Plasmid pAUSMDU00014361_03CP045830.1=NZ_CP045830.1

Assembly statistics

MoleculeTotal
Length
All5,774,445
Chromosome 5,570,476
Plasmid pAUSMDU00014361_01100,778
Plasmid pAUSMDU00014361_02100,217
Plasmid pAUSMDU00014361_032,974

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0277.7387.07
Best-match type99.0277.7387.07

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna