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ASM979353v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 10432wG11
BioSample:
SAMN13558858
BioProject:
PRJNA578301
Submitter:
washington state university
Date:
2019/12/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
GenBank assembly accession:
GCA_009793535.1 (latest)
RefSeq assembly accession:
GCF_009793535.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WTLS01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
yes
Genome coverage:
20x
Sequencing technology:
Illumina MiSeq

IDs: 5410481 [UID] 15676568 [GenBank] 15910838 [RefSeq]

See Genome Information for Escherichia coli

There are 268300 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/18/2019 15:44:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,041
CDSs (total)::5,929
Genes (coding)::5,653
CDSs (with protein)::5,653
Genes (RNA)::112
rRNAs::7, 7, 4 (5S, 16S, 23S)
complete rRNAs::7, 1 (5S, 23S)
partial rRNAs::7, 3 (16S, 23S)
tRNAs::84
ncRNAs::10
Pseudo Genes (total)::276
CDSs (without protein)::276
Pseudo Genes (ambiguous residues)::0 of 276
Pseudo Genes (frameshifted)::104 of 276
Pseudo Genes (incomplete)::142 of 276
Pseudo Genes (internal stop)::57 of 276
Pseudo Genes (multiple problems)::25 of 276
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,559,190
Total ungapped length5,559,190
Number of contigs763
Contig N5081,624
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)763

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,559,1907635,559,19081,62400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9481.3184.87
Best-match type98.9481.3184.87

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna