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Source database (GenBank or RefSeq) File type

UM_NZW_1.0

Organism name:

Oryctolagus cuniculus (rabbit)

Infraspecific name:

Breed: New Zealand White

Isolate:

DNA-2018

Sex:

male

BioSample:

SAMN12179861

BioProject:

PRJNA274594

Submitter:

Shanghai Institutes for Biological Sciences

Date:

2021/02/04

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009806435.2 (latest)

RefSeq assembly accession:

GCF_009806435.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VIYN02

Assembly method:

HGAP v. 4; LR_Gapcloser v. 1.1; Quickmerge v. SEP-2018; Pilon v. 1.22

Expected final version:

Reference guided assembly:

GCF_000003625.3

Genome coverage:

40.0x

Sequencing technology:

PacBio

IDs: 9220731 [UID] 24837048 [GenBank] 37120158 [RefSeq]

See Genome Information for Oryctolagus cuniculus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009806435.2	≠	GCF_009806435.1	UM_NZW_1.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_009806435.1	n/a	n/a	UM_NZW_0.0	Contig	Replaced GenBank

Comment

Global statistics

Total sequence length	2,841,507,030
Total ungapped length	2,775,625,708
Gaps between scaffolds	0
Number of scaffolds	3,160
Scaffold N50	111,644,748
Scaffold L50	10
Number of contigs	21,335
Contig N50	337,730
Contig L50	2,279
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	3,160

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM028932.1	=	NC_067374.1	0
Chromosome 2	CM028933.1	=	NC_067375.1	0
Chromosome 3	CM028934.1	=	NC_067376.1	0
Chromosome 4	CM028935.1	=	NC_067377.1	0
Chromosome 5	CM028936.1	=	NC_067378.1	0
Chromosome 6	CM028937.1	=	NC_067379.1	0
Chromosome 7	CM028938.1	=	NC_067380.1	0
Chromosome 8	CM028939.1	=	NC_067381.1	0
Chromosome 9	CM028940.1	=	NC_067382.1	0
Chromosome 10	CM028941.1	=	NC_067383.1	0
Chromosome 11	CM028942.1	=	NC_067384.1	0
Chromosome 12	CM028943.1	=	NC_067385.1	0
Chromosome 13	CM028944.1	=	NC_067386.1	0
Chromosome 14	CM028945.1	=	NC_067387.1	0
Chromosome 15	CM028946.1	=	NC_067388.1	0
Chromosome 16	CM028947.1	=	NC_067389.1	0
Chromosome 17	CM028948.1	=	NC_067390.1	0
Chromosome 18	CM028949.1	=	NC_067391.1	0
Chromosome 19	CM028950.1	=	NC_067392.1	0
Chromosome 20	CM028951.1	=	NC_067393.1	0
Chromosome 21	CM028952.1	=	NC_067394.1	0
Chromosome X	CM028953.1	=	NC_067395.1	0
unplaced	n/a	n/a	n/a	3,137

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,841,489,785	3,159	2,775,608,463	111,644,748	18,175
Chromosome 1	208,594,813	1	204,447,247	208,594,813	1,176
Chromosome 2	174,780,402	1	171,745,775	174,780,402	959
Chromosome 3	155,438,301	1	152,045,967	155,438,301	830
Chromosome 4	99,192,386	1	95,942,005	99,192,386	550
Chromosome 5	38,747,511	1	35,677,151	38,747,511	184
Chromosome 6	29,114,670	1	25,903,839	29,114,670	191
Chromosome 7	173,487,868	1	169,627,803	173,487,868	935
Chromosome 8	111,925,955	1	108,354,814	111,925,955	639
Chromosome 9	116,065,902	1	112,576,346	116,065,902	564
Chromosome 10	48,038,019	1	47,789,953	48,038,019	257
Chromosome 11	89,504,222	1	85,975,318	89,504,222	469
Chromosome 12	159,802,732	1	155,989,021	159,802,732	958
Chromosome 13	143,440,462	1	139,844,489	143,440,462	786
Chromosome 14	164,859,049	1	160,679,973	164,859,049	1,162
Chromosome 15	105,940,942	1	105,215,559	105,940,942	676
Chromosome 16	85,360,462	1	82,126,554	85,360,462	461
Chromosome 17	92,563,521	1	89,120,994	92,563,521	495
Chromosome 18	66,668,505	1	66,417,212	66,668,505	315
Chromosome 19	54,763,317	1	54,578,158	54,763,317	299
Chromosome 20	32,839,339	1	32,673,521	32,839,339	159
Chromosome 21	16,079,413	1	15,898,686	16,079,413	141
Chromosome X	111,644,748	1	106,797,010	111,644,748	2,143
unplaced	562,637,246	3,137	556,181,068	1,167,006	3,826

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UM_NZW_1.0

See Genome Information for Oryctolagus cuniculus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear