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GSC_riverotter_1.0

Organism name:
Lontra canadensis (Northern American river otter)
Isolate:
GAN:19392208
Sex:
female
BioSample:
SAMN13049247
BioProject:
PRJNA578111
Submitter:
Canada's Genomic Enterprise
Date:
2020/01/27
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_010015895.1 (latest)
RefSeq assembly accession:
GCF_010015895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WMAJ01
Assembly method:
Supernova v. 2.1.1
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
Illumina HiSeq

IDs: 5515941 [UID] 16103398 [GenBank] 17376628 [RefSeq]

See Genome Information for Lontra canadensis

History (Show revision history)

Comment

Global statistics

Total sequence length2,405,748,306
Total ungapped length2,395,576,457
Gaps between scaffolds0
Number of scaffolds7,023
Scaffold N5018,460,785
Scaffold L5039
Number of contigs13,981
Contig N50691,969
Contig L501,029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13,981

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,405,748,3067,0232,395,576,45718,460,7856,9580