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Source database (GenBank or RefSeq) File type

ASM1064508v2

Organism name:

Acipenser ruthenus (sterlet)

Isolate:

Gen_M01

BioSample:

SAMN12612932

BioProject:

PRJNA561280

Submitter:

University of Wuerzburg

Date:

2020/02/19

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_010645085.2 (latest)

RefSeq assembly accession:

GCF_010645085.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

VTUV01

Assembly method:

SmartDeNovo v. May-2017; 3D-DNA v. 180114

Expected final version:

yes

Genome coverage:

42.0x

Sequencing technology:

Illumina NovaSeq; PacBio; Hi-C

IDs: 16259301 [UID] 41696448 [GenBank] 41696468 [RefSeq]

See Genome Information for Acipenser ruthenus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_010645085.2	≠	GCF_010645085.2	ASM1064508v2	Chromosome	Latest GenBank, RefSeq suppressed
GCA_010645085.1	≠	GCF_010645085.1	ASM1064508v1	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

In March 2023 36 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	1,825,170,888
Total ungapped length	1,823,923,088
Gaps between scaffolds	0
Number of scaffolds	3,367
Scaffold N50	42,361,471
Scaffold L50	12
Number of contigs	9,606
Contig N50	602,209
Contig L50	832
Total number of chromosomes and plasmids	60
Number of component sequences (WGS or clone)	3,367

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM021251.1	=	NC_048323.1	0
Chromosome 2	CM021252.1	=	NC_048324.1	0
Chromosome 3	CM021253.1	=	NC_048325.1	0
Chromosome 4	CM021254.1	=	NC_048326.1	0
Chromosome 5	CM021255.1	=	NC_048327.1	0
Chromosome 6	CM021256.1	=	NC_048328.1	0
Chromosome 7	CM021257.1	=	NC_048329.1	0
Chromosome 8	CM021258.1	=	NC_048330.1	0
Chromosome 9	CM021259.1	=	NC_048331.1	0
Chromosome 10	CM021260.1	=	NC_048332.1	0
Chromosome 11	CM021261.1	=	NC_048333.1	0
Chromosome 12	CM021262.1	=	NC_048334.1	0
Chromosome 13	CM021263.1	=	NC_048335.1	0
Chromosome 14	CM021264.1	=	NC_048336.1	0
Chromosome 15	CM021265.1	=	NC_048337.1	0
Chromosome 16	CM021266.1	=	NC_048338.1	0
Chromosome 17	CM021267.1	=	NC_048339.1	0
Chromosome 18	CM021268.1	=	NC_048340.1	0
Chromosome 19	CM021269.1	=	NC_048341.1	0
Chromosome 20	CM021270.1	=	NC_048342.1	0
Chromosome 21	CM021271.1	=	NC_048343.1	0
Chromosome 22	CM021272.1	=	NC_048344.1	0
Chromosome 23	CM021273.1	=	NC_048345.1	0
Chromosome 24	CM021274.1	=	NC_048346.1	0
Chromosome 25	CM021275.1	=	NC_048347.1	0
Chromosome 26	CM021276.1	=	NC_048348.1	0
Chromosome 27	CM021277.1	=	NC_048349.1	0
Chromosome 28	CM021278.1	=	NC_048350.1	0
Chromosome 29	CM021279.1	=	NC_048351.1	0
Chromosome 30	CM021280.1	=	NC_048352.1	0
Chromosome 31	CM021281.1	=	NC_048353.1	0
Chromosome 32	CM021282.1	=	NC_048354.1	0
Chromosome 33	CM021283.1	=	NC_048355.1	0
Chromosome 34	CM021284.1	=	NC_048356.1	0
Chromosome 35	CM021285.1	=	NC_048357.1	0
Chromosome 36	CM021286.1	=	NC_048358.1	0
Chromosome 37	CM021287.1	=	NC_048359.1	0
Chromosome 38	CM021288.1	=	NC_048360.1	0
Chromosome 39	CM021289.1	=	NC_048361.1	0
Chromosome 40	CM021290.1	=	NC_048362.1	0
Chromosome 41	CM021291.1	=	NC_048363.1	0
Chromosome 42	CM021292.1	=	NC_048364.1	0
Chromosome 43	CM021293.1	=	NC_048365.1	0
Chromosome 44	CM021294.1	=	NC_048366.1	0
Chromosome 45	CM021295.1	=	NC_048367.1	0
Chromosome 46	CM021296.1	=	NC_048368.1	0
Chromosome 47	CM021297.1	=	NC_048369.1	0
Chromosome 48	CM021298.1	=	NC_048370.1	0
Chromosome 49	CM021299.1	=	NC_048371.1	0
Chromosome 50	CM021300.1	=	NC_048372.1	0
Chromosome 51	CM021301.1	=	NC_048373.1	0
Chromosome 52	CM021302.1	=	NC_048374.1	0
Chromosome 53	CM021303.1	=	NC_048375.1	0
Chromosome 54	CM021304.1	=	NC_048376.1	0
Chromosome 55	CM021305.1	=	NC_048377.1	0
Chromosome 56	CM021306.1	=	NC_048378.1	0
Chromosome 57	CM021307.1	=	NC_048379.1	0
Chromosome 58	CM021308.1	=	NC_048380.1	0
Chromosome 59	CM021309.1	=	NC_048381.1	0
Chromosome 60	CM021310.1	=	NC_048382.1	0
unplaced	n/a	n/a	n/a	3,307

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,825,170,888	3,367	1,823,923,088	42,361,471	6,239
Chromosome 1	122,559,982	1	122,469,782	122,559,982	451
Chromosome 2	108,220,468	1	108,160,468	108,220,468	300
Chromosome 3	106,749,043	1	106,692,443	106,749,043	283
Chromosome 4	105,784,529	1	105,723,729	105,784,529	304
Chromosome 5	88,082,269	1	88,037,069	88,082,269	226
Chromosome 6	84,904,194	1	84,864,794	84,904,194	197
Chromosome 7	64,984,380	1	64,950,580	64,984,380	169
Chromosome 8	63,073,767	1	63,027,367	63,073,767	232
Chromosome 9	56,397,294	1	56,360,094	56,397,294	186
Chromosome 10	49,635,273	1	49,612,673	49,635,273	113
Chromosome 11	43,054,992	1	43,030,592	43,054,992	122
Chromosome 12	42,361,471	1	42,334,871	42,361,471	133
Chromosome 13	37,059,571	1	37,044,771	37,059,571	74
Chromosome 14	36,880,936	1	36,858,936	36,880,936	110
Chromosome 15	34,739,146	1	34,715,946	34,739,146	116
Chromosome 16	34,690,505	1	34,665,705	34,690,505	124
Chromosome 17	33,696,931	1	33,681,731	33,696,931	76
Chromosome 18	33,377,298	1	33,364,298	33,377,298	65
Chromosome 19	29,822,879	1	29,801,879	29,822,879	105
Chromosome 20	28,949,873	1	28,927,873	28,949,873	110
Chromosome 21	28,711,989	1	28,692,589	28,711,989	97
Chromosome 22	28,630,400	1	28,611,400	28,630,400	95
Chromosome 23	28,080,677	1	28,064,277	28,080,677	82
Chromosome 24	27,918,051	1	27,900,251	27,918,051	89
Chromosome 25	26,390,102	1	26,363,902	26,390,102	131
Chromosome 26	26,065,435	1	26,050,835	26,065,435	73
Chromosome 27	25,289,324	1	25,272,924	25,289,324	82
Chromosome 28	21,672,497	1	21,655,097	21,672,497	87
Chromosome 29	18,992,144	1	18,981,344	18,992,144	54
Chromosome 30	18,310,215	1	18,292,815	18,310,215	87
Chromosome 31	13,157,078	1	13,147,478	13,157,078	48
Chromosome 32	12,953,733	1	12,920,733	12,953,733	165
Chromosome 33	11,347,065	1	11,308,265	11,347,065	194
Chromosome 34	11,258,359	1	11,238,559	11,258,359	99
Chromosome 35	11,115,818	1	11,078,418	11,115,818	187
Chromosome 36	11,042,709	1	10,984,509	11,042,709	291
Chromosome 37	11,008,459	1	10,998,259	11,008,459	51
Chromosome 38	8,398,389	1	8,388,989	8,398,389	47
Chromosome 39	7,837,263	1	7,836,063	7,837,263	6
Chromosome 40	7,816,335	1	7,814,935	7,816,335	7
Chromosome 41	7,104,318	1	7,095,718	7,104,318	43
Chromosome 42	7,088,324	1	7,086,124	7,088,324	11
Chromosome 43	6,938,814	1	6,924,814	6,938,814	70
Chromosome 44	6,856,853	1	6,855,253	6,856,853	8
Chromosome 45	6,379,585	1	6,351,585	6,379,585	140
Chromosome 46	6,336,353	1	6,330,953	6,336,353	27
Chromosome 47	5,782,361	1	5,777,961	5,782,361	22
Chromosome 48	5,626,462	1	5,623,662	5,626,462	14
Chromosome 49	5,536,740	1	5,524,140	5,536,740	63
Chromosome 50	5,455,947	1	5,441,147	5,455,947	74
Chromosome 51	4,924,922	1	4,914,722	4,924,922	51
Chromosome 52	4,263,311	1	4,254,711	4,263,311	43
Chromosome 53	3,954,988	1	3,945,788	3,954,988	46
Chromosome 54	3,509,402	1	3,506,802	3,509,402	13
Chromosome 55	3,478,265	1	3,475,465	3,478,265	14
Chromosome 56	3,260,278	1	3,253,678	3,260,278	33
Chromosome 57	2,321,989	1	2,309,789	2,321,989	61
Chromosome 58	901,641	1	898,441	901,641	16
Chromosome 59	547,560	1	545,960	547,560	8
Chromosome 60	487,542	1	484,742	487,542	14
unplaced	173,394,390	3,307	173,394,390	93,000	0

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ASM1064508v2

See Genome Information for Acipenser ruthenus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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