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Source database (GenBank or RefSeq) File type

mTurTru1.mat.Y

Organism name:

Tursiops truncatus (common bottlenose dolphin)

Isolate:

mTurTru1

Sex:

male

BioSample:

SAMN12326775

BioProject:

PRJNA608726

Submitter:

Vertebrate Genomes Project

Date:

2020/03/27

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_011762595.1 (latest)

RefSeq assembly accession:

GCF_011762595.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JAAOMD01

Assembly method:

TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-01-15; VGP trio assembly pipeline v. 1.6

Expected final version:

Genome coverage:

63.7x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

IDs: 6463881 [UID] 18125728 [GenBank] 18828668 [RefSeq]

See Genome Information for Tursiops truncatus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011762595.1	≠	GCF_011762595.1	mTurTru1.mat.Y	Chromosome	Latest GenBank, Latest RefSeq

Comment

This is the trio assembly merged haplotype data. The maternal and paternal haplotype sequences are in WGS projects JAAOMB000000000 and JAAOMC000000000 respectively.

Global statistics

Total sequence length	2,378,522,213
Total ungapped length	2,372,299,697
Gaps between scaffolds	0
Number of scaffolds	362
Scaffold N50	108,430,135
Scaffold L50	9
Number of contigs	1,036
Contig N50	9,729,386
Contig L50	72
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	362

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM022274.1	=	NC_047034.1	0
Chromosome 2	CM022275.1	=	NC_047035.1	0
Chromosome 3	CM022276.1	=	NC_047036.1	0
Chromosome 4	CM022277.1	=	NC_047037.1	0
Chromosome 5	CM022278.1	=	NC_047038.1	0
Chromosome 6	CM022279.1	=	NC_047039.1	0
Chromosome 7	CM022280.1	=	NC_047040.1	0
Chromosome 8	CM022281.1	=	NC_047041.1	0
Chromosome 9	CM022282.1	=	NC_047042.1	0
Chromosome 10	CM022283.1	=	NC_047043.1	0
Chromosome 11	CM022284.1	=	NC_047044.1	0
Chromosome 12	CM022285.1	=	NC_047045.1	0
Chromosome 13	CM022286.1	=	NC_047046.1	0
Chromosome 14	CM022287.1	=	NC_047047.1	0
Chromosome 15	CM022288.1	=	NC_047048.1	0
Chromosome 16	CM022289.1	=	NC_047049.1	0
Chromosome 17	CM022290.1	=	NC_047050.1	0
Chromosome 18	CM022291.1	=	NC_047051.1	0
Chromosome 19	CM022292.1	=	NC_047052.1	0
Chromosome 20	CM022293.1	=	NC_047053.1	0
Chromosome 21	CM022294.1	=	NC_047054.1	0
Chromosome X	CM022295.1	=	NC_047055.1	0
Chromosome Y	n/a	n/a	n/a	4
unplaced	n/a	n/a	n/a	335

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,378,505,825	361	2,372,283,309	108,430,135	674	0
Chromosome 1	Assembled molecule	183,742,880	1	183,670,497	183,742,880	29	0
Chromosome 2	Assembled molecule	176,472,748	1	175,957,052	176,472,748	40	0
Chromosome 3	Assembled molecule	171,421,769	1	171,315,500	171,421,769	37	0
Chromosome 4	Assembled molecule	144,183,200	1	143,858,085	144,183,200	23	0
Chromosome 5	Assembled molecule	137,487,549	1	137,342,802	137,487,549	21	0
Chromosome 6	Assembled molecule	115,599,616	1	115,045,965	115,599,616	26	0
Chromosome 7	Assembled molecule	114,015,307	1	113,920,373	114,015,307	28	0
Chromosome 8	Assembled molecule	108,430,135	1	108,302,167	108,430,135	32	0
Chromosome 9	Assembled molecule	105,335,178	1	105,328,626	105,335,178	19	0
Chromosome 10	Assembled molecule	102,812,509	1	102,768,691	102,812,509	20	0
Chromosome 11	Assembled molecule	102,167,733	1	100,827,367	102,167,733	30	0
Chromosome 12	Assembled molecule	89,330,967	1	89,267,229	89,330,967	17	0
Chromosome 13	Assembled molecule	88,485,069	1	88,390,345	88,485,069	17	0
Chromosome 14	Assembled molecule	88,483,154	1	88,475,726	88,483,154	15	0
Chromosome 15	Assembled molecule	86,293,990	1	86,286,608	86,293,990	10	0
Chromosome 16	Assembled molecule	83,508,544	1	83,507,318	83,508,544	10	0
Chromosome 17	Assembled molecule	78,442,772	1	78,298,784	78,442,772	23	0
Chromosome 18	Assembled molecule	78,151,963	1	78,150,450	78,151,963	12	0
Chromosome 19	Assembled molecule	58,636,127	1	58,371,562	58,636,127	11	0
Chromosome 20	Assembled molecule	58,467,291	1	58,455,586	58,467,291	15	0
Chromosome 21	Assembled molecule	35,682,248	1	35,596,258	35,682,248	8	0
Chromosome X	Assembled molecule	128,693,445	1	126,791,407	128,693,445	151	0
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	12,703,760012,703,760	404	12,410,872012,410,872	7,055,93107,055,931	15015	000
unplaced	Assembled molecule	29,957,871	335	29,944,039	127,020	65	0

Assembly

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mTurTru1.mat.Y

See Genome Information for Tursiops truncatus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear