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UG_Zviv_1

Organism name:
Zootoca vivipara (common lizard)
Isolate:
ELT05324
Sex:
female
BioSample:
SAMN14329711
BioProject:
PRJNA610958
Submitter:
University of Glasgow
Date:
2020/04/01
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_011800845.1 (latest)
RefSeq assembly accession:
GCF_011800845.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
JAATIO01
Assembly method:
Platanus v. 1.2.4; OPERA-LG v. 2.0.6; AGOUTI v. 0.3.3
Expected final version:
yes
Genome coverage:
70.0x
Sequencing technology:
Illumina HiSeq; PacBio Sequel

IDs: 6489571 [UID] 18188358 [GenBank] 20114058 [RefSeq]

See Genome Information for Zootoca vivipara

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,464,283,545
Total ungapped length1,420,899,874
Gaps between scaffolds0
Number of scaffolds25,251
Scaffold N5092,810,032
Scaffold L507
Number of contigs43,101
Contig N50219,893
Contig L501,762
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)25,251

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_011800865.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM022339.1=NC_048605.10
Linkage Group LG2CM022340.1=NC_048606.10
Linkage Group LG3CM022341.1=NC_048607.10
Linkage Group LG4CM022342.1=NC_048608.10
Linkage Group LG5CM022343.1=NC_048609.10
Linkage Group LG6CM022344.1=NC_048610.10
Linkage Group LG7CM022345.1=NC_048611.10
Linkage Group LG8CM022346.1=NC_048612.10
Linkage Group LG9CM022347.1=NC_048613.10
Linkage Group LG10CM022348.1=NC_048614.10
Linkage Group LG11CM022349.1=NC_048615.10
Linkage Group LG12CM022350.1=NC_048616.10
Linkage Group LG13CM022351.1=NC_048617.10
Linkage Group LG14CM022352.1=NC_048618.10
Linkage Group LG15CM022353.1=NC_048619.10
Linkage Group LG16CM022354.1=NC_048620.10
Linkage Group LG17CM022355.1=NC_048621.10
Linkage Group LG18CM022356.1=NC_048622.10
Linkage Group LG19CM022357.1=NC_048623.10
unplacedn/an/an/a25,232

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,464,283,54525,2511,420,899,87492,810,03217,8500
Linkage Group LG1131,769,4431130,349,322131,769,4431,1240
Linkage Group LG2117,834,3631116,097,838117,834,3631,1090
Linkage Group LG3116,371,4801114,956,521116,371,4809450
Linkage Group LG4100,631,306198,502,493100,631,3061,6300
Linkage Group LG598,023,110196,705,06998,023,1109360
Linkage Group LG694,199,661192,999,01394,199,6618390
Linkage Group LG792,810,032191,765,38592,810,0327320
Linkage Group LG879,626,714178,881,13679,626,7145800
Linkage Group LG969,679,922168,804,34869,679,9226610
Linkage Group LG1054,413,957153,734,29454,413,9575070
Linkage Group LG1151,059,636150,501,07951,059,6364820
Linkage Group LG1249,589,567148,996,56749,589,5674480
Linkage Group LG1348,213,930147,215,45148,213,9306480
Linkage Group LG1446,006,402145,587,56046,006,4022870
Linkage Group LG1544,540,502144,008,30744,540,5023830
Linkage Group LG1640,703,745140,112,97540,703,7454520
Linkage Group LG1739,436,030138,740,74539,436,0304310
Linkage Group LG1835,462,695135,149,41035,462,6952470
Linkage Group LG1924,898,947124,542,90824,898,9472450
unplaced129,012,10325,232103,249,45319,8155,1640