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DMR_v1.0_HiC

Organism name:
Fukomys damarensis (Damara mole-rat)
Isolate:
Sample0158
Sex:
female
BioSample:
SAMN10973724
BioProject:
PRJNA604608
Submitter:
DNA Zoo Consortium
Date:
2020/04/13
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012274545.1 (latest)
RefSeq assembly accession:
GCF_012274545.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAAHWF01
Assembly method:
3D DNA v. NOV-2017
Expected final version:
yes
Reference guided assembly:
GCA_000743615.1
Genome coverage:
29.0x
Sequencing technology:
Illumina X Ten; Hi-C

IDs: 6721021 [UID] 18661788 [GenBank] 18685728 [RefSeq]

See Genome Information for Fukomys damarensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,334,375,022
Total ungapped length2,286,001,154
Gaps between scaffolds0
Number of scaffolds73,970
Scaffold N5062,586,000
Scaffold L5015
Number of contigs162,869
Contig N5044,756
Contig L5015,206
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)73,970

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,334,358,65073,9692,285,984,78262,586,00088,8990
MoleculeTotal
Length
Mitochondrion MT16,372