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ASM1231758v1

Organism name:
Thermosulfurimonas marina (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SU872
BioSample:
SAMN12566302
BioProject:
PRJNA560002
Submitter:
IUEM
Date:
2020/04/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_012317585.1 (latest)
RefSeq assembly accession:
GCF_012317585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8-beta
Expected final version:
yes
Genome coverage:
116.0x
Sequencing technology:
Illumina naoMiseq (2x150bp paired-read); PacBio Sequel

IDs: 6731221 [UID] 18707908 [GenBank] 18987408 [RefSeq]

See Genome Information for Thermosulfurimonas marina

History (Show revision history)

Comment

Bacteria and source DNA available from LM2E
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/06/2023 01:05:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,844
CDSs (total)::1,790
Genes (coding)::1,782
CDSs (with protein)::1,782
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::0 of 8
Pseudo Genes (incomplete)::8 of 8
Pseudo Genes (internal stop)::0 of 8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,763,258
Total ungapped length1,763,258
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012317605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP042909.1=NZ_CP042909.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,763,258

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermosulfurimonas marinaThermosulfurimonas marina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001652585.1Thermosulfurimonas dismutanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.044.543.77

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected