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Source database (GenBank or RefSeq) File type

CAS_Tse_1.0

Organism name:

Trachemys scripta elegans (red-eared slider turtle)

Isolate:

TJP31775

BioSample:

SAMN12189062

BioProject:

PRJNA552319

Submitter:

California Academy of Sciences

Date:

2020/05/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013100865.1 (latest)

RefSeq assembly accession:

GCF_013100865.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VIRI01

Assembly method:

Supernova v. 1.2

Expected final version:

Genome coverage:

60.0x

Sequencing technology:

Illumina NovaSeq; PacBio

IDs: 7134301 [UID] 19611518 [GenBank] 19715108 [RefSeq]

See Genome Information for Trachemys scripta

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013100865.1	≠	GCF_013100865.1	CAS_Tse_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,126,199,303
Total ungapped length	2,044,060,316
Gaps between scaffolds	0
Number of scaffolds	138
Scaffold N50	140,411,086
Scaffold L50	5
Number of contigs	17,980
Contig N50	204,575
Contig L50	2,897
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	138

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023056.1	=	NC_048298.1	0
Chromosome 2	CM023057.1	=	NC_048299.1	0
Chromosome 3	CM023058.1	=	NC_048300.1	0
Chromosome 4	CM023059.1	=	NC_048301.1	0
Chromosome 5	CM023060.1	=	NC_048302.1	0
Chromosome 6	CM023061.1	=	NC_048303.1	0
Chromosome 7	CM023062.1	=	NC_048304.1	0
Chromosome 8	CM023063.1	=	NC_048305.1	0
Chromosome 9	CM023064.1	=	NC_048306.1	0
Chromosome 10	CM023065.1	=	NC_048307.1	0
Chromosome 11	CM023066.1	=	NC_048308.1	0
Chromosome 12	CM023067.1	=	NC_048309.1	0
Chromosome 13	CM023068.1	=	NC_048310.1	0
Chromosome 14	CM023069.1	=	NC_048311.1	0
Chromosome 15	CM023070.1	=	NC_048312.1	0
Chromosome 16	CM023071.1	=	NC_048313.1	0
Chromosome 17	CM023072.1	=	NC_048314.1	0
Chromosome 18	CM023073.1	=	NC_048315.1	0
Chromosome 19	CM023074.1	=	NC_048316.1	0
Chromosome 20	CM023075.1	=	NC_048317.1	0
Chromosome 21	CM023076.1	=	NC_048318.1	0
Chromosome 22	CM023077.1	=	NC_048319.1	0
Chromosome 23	CM023078.1	=	NC_048320.1	0
Chromosome 24	CM023079.1	=	NC_048321.1	0
Chromosome 25	CM023080.1	=	NC_048322.1	0
unplaced	n/a	n/a	n/a	112

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,126,182,493	137	2,044,043,506	140,411,086	17,842
Chromosome 1	347,660,827	1	336,388,934	347,660,827	2,594
Chromosome 2	283,098,403	1	273,598,024	283,098,403	2,230
Chromosome 3	201,239,519	1	196,170,246	201,239,519	1,347
Chromosome 4	142,343,550	1	137,348,488	142,343,550	1,158
Chromosome 5	140,411,086	1	136,495,428	140,411,086	990
Chromosome 6	129,675,691	1	126,264,182	129,675,691	938
Chromosome 7	126,808,733	1	122,453,129	126,808,733	1,045
Chromosome 8	109,307,977	1	105,187,626	109,307,977	904
Chromosome 9	104,972,506	1	101,671,025	104,972,506	890
Chromosome 10	85,829,911	1	82,909,194	85,829,911	754
Chromosome 11	76,047,897	1	74,138,543	76,047,897	555
Chromosome 12	45,061,502	1	42,354,194	45,061,502	455
Chromosome 13	43,716,676	1	41,551,417	43,716,676	408
Chromosome 14	42,221,082	1	39,429,421	42,221,082	447
Chromosome 15	32,210,117	1	31,199,241	32,210,117	269
Chromosome 16	30,045,477	1	24,780,543	30,045,477	668
Chromosome 17	26,830,997	1	25,877,667	26,830,997	243
Chromosome 18	24,772,400	1	23,854,906	24,772,400	219
Chromosome 19	22,813,715	1	21,840,811	22,813,715	204
Chromosome 20	19,368,400	1	18,659,732	19,368,400	178
Chromosome 21	19,049,219	1	18,373,921	19,049,219	148
Chromosome 22	16,439,607	1	15,262,939	16,439,607	223
Chromosome 23	16,074,632	1	14,692,905	16,074,632	229
Chromosome 24	15,148,950	1	12,805,662	15,148,950	273
Chromosome 25	7,130,772	1	6,037,877	7,130,772	136
unplaced	17,902,847	112	14,697,451	1,077,423	337

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CAS_Tse_1.0

See Genome Information for Trachemys scripta

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear