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Source database (GenBank or RefSeq) File type

CSU_Ecrag_1.0

Organism name:

Etheostoma cragini (Arkansas darter)

Isolate:

CJK2018

BioSample:

SAMN14351042

BioProject:

PRJNA611833

Submitter:

Kellogg Biological Station, Michigan State University

Date:

2020/05/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013103735.1 (latest)

RefSeq assembly accession:

GCF_013103735.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 2 unlocalized scaffolds on chromosome MT

Data displayed for RefSeq version

WGS Project:

JAAVJE01

Assembly method:

Meraculous v. SEPTEMBER-2018; Chicago + HiRise v. NOVEMBER-2018; HiC + HiRise v. NOVEMBER-2018

Expected final version:

yes

Genome coverage:

208.6x

Sequencing technology:

Illumina HiSeq

IDs: 7134701 [UID] 19615968 [GenBank] 19753428 [RefSeq]

See Genome Information for Etheostoma cragini

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013103735.1	≠	GCF_013103735.1	CSU_Ecrag_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	643,078,674
Total ungapped length	639,764,533
Gaps between scaffolds	0
Number of scaffolds	4,664
Scaffold N50	27,593,271
Scaffold L50	11
Number of contigs	39,716
Contig N50	45,088
Contig L50	3,912
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	4,664

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023106.1	=	NC_048407.1	0
Chromosome 2	CM023107.1	=	NC_048408.1	0
Chromosome 3	CM023108.1	=	NC_048409.1	0
Chromosome 4	CM023109.1	=	NC_048410.1	0
Chromosome 5	CM023110.1	=	NC_048411.1	0
Chromosome 6	CM023111.1	=	NC_048412.1	0
Chromosome 7	CM023112.1	=	NC_048413.1	0
Chromosome 8	CM023113.1	=	NC_048414.1	0
Chromosome 9	CM023114.1	=	NC_048415.1	0
Chromosome 10	CM023115.1	=	NC_048416.1	0
Chromosome 11	CM023116.1	=	NC_048417.1	0
Chromosome 12	CM023117.1	=	NC_048418.1	0
Chromosome 13	CM023118.1	=	NC_048419.1	0
Chromosome 14	CM023119.1	=	NC_048420.1	0
Chromosome 15	CM023120.1	=	NC_048421.1	0
Chromosome 16	CM023121.1	=	NC_048422.1	0
Chromosome 17	CM023122.1	=	NC_048423.1	0
Chromosome 18	CM023123.1	=	NC_048424.1	0
Chromosome 19	CM023124.1	=	NC_048425.1	0
Chromosome 20	CM023125.1	=	NC_048426.1	0
Chromosome 21	CM023126.1	=	NC_048427.1	0
Chromosome 22	CM023127.1	=	NC_048428.1	0
Chromosome 23	CM023128.1	=	NC_048429.1	0
Chromosome 24	CM023129.1	=	NC_048430.1	0
unplaced	n/a	n/a	n/a	4,640

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	643,078,674	4,664	639,764,533	27,593,271	35,052
Chromosome 1	34,469,967	1	34,319,636	34,469,967	1,648
Chromosome 2	30,055,650	1	29,928,432	30,055,650	1,343
Chromosome 3	30,357,667	1	30,214,325	30,357,667	1,537
Chromosome 4	30,698,871	1	30,569,456	30,698,871	1,363
Chromosome 5	30,985,427	1	30,844,801	30,985,427	1,502
Chromosome 6	28,644,895	1	28,509,435	28,644,895	1,432
Chromosome 7	27,593,271	1	27,476,790	27,593,271	1,288
Chromosome 8	29,828,258	1	29,683,884	29,828,258	1,569
Chromosome 9	29,703,099	1	29,567,926	29,703,099	1,465
Chromosome 10	29,206,457	1	29,050,269	29,206,457	1,628
Chromosome 11	29,379,295	1	29,227,190	29,379,295	1,597
Chromosome 12	26,121,632	1	26,002,678	26,121,632	1,304
Chromosome 13	26,142,214	1	26,027,526	26,142,214	1,244
Chromosome 14	25,117,826	1	24,982,108	25,117,826	1,447
Chromosome 15	24,847,628	1	24,713,509	24,847,628	1,425
Chromosome 16	24,978,932	1	24,841,033	24,978,932	1,439
Chromosome 17	25,828,782	1	25,726,628	25,828,782	1,113
Chromosome 18	23,377,547	1	23,268,769	23,377,547	1,176
Chromosome 19	19,178,995	1	19,062,010	19,178,995	1,225
Chromosome 20	24,100,573	1	24,009,204	24,100,573	997
Chromosome 21	21,983,240	1	21,882,200	21,983,240	1,099
Chromosome 22	22,375,374	1	22,257,136	22,375,374	1,249
Chromosome 23	19,333,600	1	19,227,540	19,333,600	1,094
Chromosome 24	13,626,644	1	13,555,676	13,626,644	767
unplaced	15,142,830	4,640	14,816,372	4,099	3,101

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CSU_Ecrag_1.0

See Genome Information for Etheostoma cragini

Pathogen Detection Resources

History (Show revision history)

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