LBDM_Dsuz_2.1.pri

Organism name:: Drosophila suzukii (flies)
Infraspecific name:: Strain: WT3_2.0
BioSample:: SAMN13521054
BioProject:: PRJNA594550
Submitter:: Institut de Biologie du Developpement de Marseille
Date:: 2020/06/15
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_013340165.1 (latest)
RefSeq assembly accession:: GCF_013340165.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: WWNF01
Assembly method:: FALCON v. 2.3.0; CANU v. 1.3; Quickmerge v. 2017/03/15
Expected final version:: yes
Genome coverage:: 160.0x
Sequencing technology:: PacBio Sequel

IDs: 7280721 [UID] 20075288 [GenBank] 22545178 [RefSeq]

See Genome Information for Drosophila suzukii

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013340165.1	=	GCF_013340165.1	LBDM_Dsuz_2.1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly represents the principal haplotype of the diploid genome Drosophila suzukii. The alternate haplotype sequences are in WGS project WWNG00000000

Global statistics

Total sequence length	268,012,156
Total ungapped length	268,012,156
Gaps between scaffolds	0
Number of scaffolds	546
Scaffold N50	2,609,782
Scaffold L50	16
Number of contigs	546
Contig N50	2,609,782
Contig L50	16
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	546

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 2L	n/a	n/a	n/a	4
Chromosome 2R	n/a	n/a	n/a	6
Chromosome 3L	n/a	n/a	n/a	6
Chromosome 3R	n/a	n/a	n/a	25
Chromosome 4	CM023447.1	=	NC_050699.1	0
Chromosome X	n/a	n/a	n/a	7
unplaced	n/a	n/a	n/a	497

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	268,012,156	546	268,012,156	2,609,782	0	0
Chromosome 2L	AllAssembled moleculeUnlocalized scaffolds	27,358,157027,358,157	404	27,358,157027,358,157	25,589,241025,589,241	000	000
Chromosome 2R	AllAssembled moleculeUnlocalized scaffolds	25,828,096025,828,096	606	25,828,096025,828,096	14,656,957014,656,957	000	000
Chromosome 3L	AllAssembled moleculeUnlocalized scaffolds	27,947,964027,947,964	606	27,947,964027,947,964	24,550,668024,550,668	000	000
Chromosome 3R	AllAssembled moleculeUnlocalized scaffolds	38,084,860038,084,860	25025	38,084,860038,084,860	4,075,55404,075,554	000	000
Chromosome 4	Assembled molecule	2,568,912	1	2,568,912	2,568,912	0	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	31,368,355031,368,355	707	31,368,355031,368,355	6,492,41606,492,416	000	000
unplaced	Assembled molecule	114,855,812	497	114,855,812	796,615	0	0

Assembly

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LBDM_Dsuz_2.1.pri

See Genome Information for Drosophila suzukii

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

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