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ASM1334776v1

Organism name:
Scophthalmus maximus (turbot)
Infraspecific name:
Ecotype: atlantic turbot
Isolate:
AOZZmale01
Sex:
male
BioSample:
SAMN14896287
BioProject:
PRJNA631898
Submitter:
CIGENE
Date:
2020/06/18
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_013347765.1 (latest)
RefSeq assembly accession:
GCF_013347765.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
JABGBL01
Assembly method:
Flye v. 2.5.0
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 7287981 [UID] 20100328 [GenBank] 20373028 [RefSeq]

See Genome Information for Scophthalmus maximus

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length556,679,315
Total ungapped length556,677,155
Gaps between scaffolds0
Number of scaffolds126
Scaffold N5025,949,660
Scaffold L5010
Number of contigs177
Contig N5020,466,349
Contig L5011
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)126

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013347775.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM023543.1=NC_049688.10
Chromosome 2CM023544.1=NC_049689.10
Chromosome 3CM023545.1=NC_049690.10
Chromosome 4CM023546.1=NC_049691.10
Chromosome 5CM023547.1=NC_049692.10
Chromosome 6CM023548.1=NC_049693.10
Chromosome 7CM023549.1=NC_049694.10
Chromosome 8CM023550.1=NC_049695.10
Chromosome 9CM023551.1=NC_049696.10
Chromosome 10CM023552.1=NC_049697.10
Chromosome 11CM023553.1=NC_049698.10
Chromosome 12CM023554.1=NC_049699.10
Chromosome 13CM023555.1=NC_049700.10
Chromosome 14CM023556.1=NC_049701.10
Chromosome 15CM023557.1=NC_049702.10
Chromosome 16CM023558.1=NC_049703.10
Chromosome 17CM023559.1=NC_049704.10
Chromosome 18CM023560.1=NC_049705.10
Chromosome 19CM023561.1=NC_049706.10
Chromosome 20CM023562.1=NC_049707.10
Chromosome 21CM023563.1=NC_049708.10
Chromosome 22CM023564.1=NC_049709.10
unplacedn/an/an/a104

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All556,679,315126556,677,15525,949,660510
Chromosome 132,119,850132,119,71032,119,85050
Chromosome 225,180,939125,180,83925,180,93910
Chromosome 325,665,789125,665,47925,665,78940
Chromosome 431,577,461131,577,46131,577,46100
Chromosome 530,917,075130,917,06530,917,07510
Chromosome 627,601,780127,601,78027,601,78000
Chromosome 728,393,506128,393,50628,393,50600
Chromosome 825,851,785125,851,77525,851,78510
Chromosome 926,283,457126,283,45726,283,45700
Chromosome 1025,992,650125,992,65025,992,65000
Chromosome 1126,127,079126,126,92926,127,07960
Chromosome 1227,870,118127,869,70827,870,11850
Chromosome 1325,949,660125,949,55025,949,66020
Chromosome 1423,203,612123,203,40223,203,61230
Chromosome 1523,583,831123,583,62123,583,83130
Chromosome 1622,562,637122,562,53722,562,63710
Chromosome 1723,140,758123,140,64823,140,75820
Chromosome 1821,926,842121,926,74221,926,84210
Chromosome 1921,085,167121,085,12721,085,16740
Chromosome 2020,466,349120,466,34920,466,34900
Chromosome 2115,987,373115,987,37315,987,37300
Chromosome 2215,313,470115,313,47015,313,47000
unplaced9,878,1271049,877,977262,368120