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ASM1335736v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: RM13322
BioSample:
SAMN14449600
BioProject:
PRJNA573729
Submitter:
USDA-ARS, Western Regional Research Center
Date:
2020/06/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_013357365.1 (latest)
RefSeq assembly accession:
GCF_013357365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.4.1
Expected final version:
yes
Genome coverage:
201.0x
Sequencing technology:
PacBio

IDs: 7287391 [UID] 20094658 [GenBank] 20109248 [RefSeq]

See Genome Information for Escherichia coli

There are 150049 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/18/2020 20:20:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,736
CDSs (total)::5,606
Genes (coding)::5,363
CDSs (with protein)::5,363
Genes (RNA)::130
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::101
ncRNAs::7
Pseudo Genes (total)::243
CDSs (without protein)::243
Pseudo Genes (ambiguous residues)::0 of 243
Pseudo Genes (frameshifted)::127 of 243
Pseudo Genes (incomplete)::103 of 243
Pseudo Genes (internal stop)::43 of 243
Pseudo Genes (multiple problems)::25 of 243
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,698,610
Total ungapped length5,698,610
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_013357375.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP050498.1=NZ_CP050498.1
Plasmid pRM13322CP050499.1=NZ_CP050499.1

Assembly statistics

MoleculeTotal
Length
All5,698,610
Chromosome 5,622,341
Plasmid pRM1332276,269

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000690815.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000690815.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0973.0582.63
Best-match type97.0973.0582.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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