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mPipKuh1.p

Organism name:
Pipistrellus kuhlii (Kuhl's pipistrelle)
Isolate:
mPipKuh1
Sex:
male
BioSample:
SAMN14734388
BioProject:
PRJNA628567
Submitter:
Bat1K
Date:
2020/08/07
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014108245.1 (latest)
RefSeq assembly accession:
GCF_014108245.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JACAGB01
Assembly method:
DAmar v. Apr 19; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5
Expected final version:
no
Genome coverage:
80.8x
Sequencing technology:
PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq

IDs: 7872021 [UID] 21572848 [GenBank] 22343318 [RefSeq]

See Genome Information for Pipistrellus kuhlii

History (Show revision history)

Comment

Global statistics

Total sequence length1,775,688,541
Total ungapped length1,763,487,050
Gaps between scaffolds0
Number of scaffolds202
Scaffold N5080,237,350
Scaffold L507
Number of contigs596
Contig N5010,591,995
Contig L5043
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)202

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,775,688,5412021,763,487,05080,237,3503940