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Source database (GenBank or RefSeq) File type

JHU_Msex_v1.0

Organism name:

Manduca sexta (tobacco hornworm)

Isolate:

Smith_Timp_Sample1

BioSample:

SAMN15881793

BioProject:

PRJNA658700

Submitter:

Johns Hopkins University

Date:

2020/10/02

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_014839805.1 (latest)

RefSeq assembly accession:

GCF_014839805.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JACVES01

Assembly method:

Canu v. 2.0; 3D-DNA v. 180922

Expected final version:

yes

Genome coverage:

38.0x

Sequencing technology:

Oxford Nanopore MinION; Illumina NovaSeq

IDs: 8220691 [UID] 22448578 [GenBank] 22894118 [RefSeq]

See Genome Information for Manduca sexta

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014839805.1	≠	GCF_014839805.1	JHU_Msex_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	470,036,997
Total ungapped length	468,951,997
Gaps between scaffolds	0
Number of scaffolds	4,057
Scaffold N50	14,248,853
Scaffold L50	14
Number of contigs	6,227
Contig N50	424,948
Contig L50	297
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	4,057

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM026232.1	=	NC_051115.1	0
Chromosome 2	CM026233.1	=	NC_051116.1	0
Chromosome 3	CM026234.1	=	NC_051117.1	0
Chromosome 4	CM026235.1	=	NC_051118.1	0
Chromosome 5	CM026236.1	=	NC_051119.1	0
Chromosome 6	CM026237.1	=	NC_051120.1	0
Chromosome 7	CM026238.1	=	NC_051121.1	0
Chromosome 8	CM026239.1	=	NC_051122.1	0
Chromosome 9	CM026240.1	=	NC_051123.1	0
Chromosome 10	CM026241.1	=	NC_051124.1	0
Chromosome 11	CM026242.1	=	NC_051125.1	0
Chromosome 12	CM026243.1	=	NC_051126.1	0
Chromosome 13	CM026244.1	=	NC_051127.1	0
Chromosome 14	CM026245.1	=	NC_051128.1	0
Chromosome 15	CM026246.1	=	NC_051129.1	0
Chromosome 16	CM026247.1	=	NC_051130.1	0
Chromosome 17	CM026248.1	=	NC_051131.1	0
Chromosome 18	CM026249.1	=	NC_051132.1	0
Chromosome 19	CM026250.1	=	NC_051133.1	0
Chromosome 20	CM026251.1	=	NC_051134.1	0
Chromosome 21	CM026252.1	=	NC_051135.1	0
Chromosome 22	CM026253.1	=	NC_051136.1	0
Chromosome 23	CM026254.1	=	NC_051137.1	0
Chromosome 24	CM026255.1	=	NC_051138.1	0
Chromosome 25	CM026256.1	=	NC_051139.1	0
Chromosome 26	CM026257.1	=	NC_051140.1	0
Chromosome 27	CM026258.1	=	NC_051141.1	0
Chromosome 28	CM026259.1	=	NC_051142.1	0
unplaced	n/a	n/a	n/a	4,028

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	470,021,481	4,056	468,936,481	14,248,853	2,170
Chromosome 1	5,617,298	1	5,610,298	5,617,298	14
Chromosome 2	9,429,007	1	9,405,507	9,429,007	47
Chromosome 3	10,035,631	1	10,008,131	10,035,631	55
Chromosome 4	10,917,074	1	10,891,574	10,917,074	51
Chromosome 5	10,691,349	1	10,653,349	10,691,349	76
Chromosome 6	12,410,953	1	12,377,953	12,410,953	66
Chromosome 7	12,803,118	1	12,775,118	12,803,118	56
Chromosome 8	13,706,950	1	13,677,450	13,706,950	59
Chromosome 9	13,420,627	1	13,388,127	13,420,627	65
Chromosome 10	13,991,342	1	13,957,342	13,991,342	68
Chromosome 11	14,102,918	1	14,066,418	14,102,918	73
Chromosome 12	14,919,699	1	14,889,699	14,919,699	60
Chromosome 13	13,836,552	1	13,786,552	13,836,552	100
Chromosome 14	14,248,853	1	14,214,853	14,248,853	68
Chromosome 15	14,218,612	1	14,177,612	14,218,612	82
Chromosome 16	13,579,525	1	13,545,525	13,579,525	68
Chromosome 17	15,467,697	1	15,435,197	15,467,697	65
Chromosome 18	15,623,919	1	15,574,419	15,623,919	99
Chromosome 19	15,042,850	1	15,008,850	15,042,850	68
Chromosome 20	15,538,738	1	15,490,738	15,538,738	96
Chromosome 21	15,244,396	1	15,187,896	15,244,396	113
Chromosome 22	16,122,924	1	16,073,424	16,122,924	99
Chromosome 23	16,902,208	1	16,861,208	16,902,208	82
Chromosome 24	17,279,714	1	17,241,214	17,279,714	77
Chromosome 25	17,655,150	1	17,599,650	17,655,150	111
Chromosome 26	20,265,868	1	20,226,368	20,265,868	79
Chromosome 27	21,114,789	1	21,073,789	21,114,789	82
Chromosome 28	20,508,497	1	20,465,497	20,508,497	86
unplaced	65,325,223	4,028	65,272,723	20,071	105

Assembly

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JHU_Msex_v1.0

See Genome Information for Manduca sexta

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear