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Source database (GenBank or RefSeq) File type

Bmori_2016v1.0

Organism name:

Bombyx mori (domestic silkworm)

Infraspecific name:

Strain: p50T

BioSample:

SAMD00054089

BioProject:

PRJDB4947

Submitter:

Graduate School of Agricultural and Life Sciences, The University of Tokyo

Date:

2020/10/13

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_014905235.2 (latest)

RefSeq assembly accession:

GCF_014905235.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

BHWX01

Assembly method:

HGAP v. 3

Genome coverage:

140x

Sequencing technology:

PacBio RS II; Illumina HiSeq 2500

IDs: 8552821 [UID] 23208008 [GenBank] 23261928 [RefSeq]

See Genome Information for Bombyx mori

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014905235.2	≠	GCF_014905235.1	Bmori_2016v1.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_014905235.1	n/a	n/a	Bmori_2016v1.0	Scaffold	Replaced GenBank

Comment

Grant Information
Agency : Japanese Ministry of Education, Culture, Sports, Science and Technology
Agency abbreviation : MEXT
Grant ID : 221S0002
Grant title : Genome Science

Global statistics

Total sequence length	460,334,017
Total ungapped length	459,881,487
Gaps between scaffolds	0
Number of scaffolds	696
Scaffold N50	16,796,068
Scaffold L50	13
Number of contigs	726
Contig N50	12,201,325
Contig L50	16
Total number of chromosomes and plasmids	28
Number of component sequences (WGS or clone)	696

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	BHWX01000001.1	=	NC_051358.1	0
Chromosome 2	BHWX01000002.1	=	NC_051359.1	0
Chromosome 3	BHWX01000003.1	=	NC_051360.1	0
Chromosome 4	BHWX01000004.1	=	NC_051361.1	0
Chromosome 5	BHWX01000005.1	=	NC_051362.1	0
Chromosome 6	BHWX01000006.1	=	NC_051363.1	0
Chromosome 7	BHWX01000007.1	=	NC_051364.1	0
Chromosome 8	BHWX01000008.1	=	NC_051365.1	0
Chromosome 9	BHWX01000009.1	=	NC_051366.1	0
Chromosome 10	BHWX01000010.1	=	NC_051367.1	0
Chromosome 11	BHWX01000011.1	=	NC_051368.1	0
Chromosome 12	BHWX01000012.1	=	NC_051369.1	0
Chromosome 13	BHWX01000013.1	=	NC_051370.1	0
Chromosome 14	BHWX01000014.1	=	NC_051371.1	0
Chromosome 15	BHWX01000015.1	=	NC_051372.1	0
Chromosome 16	BHWX01000016.1	=	NC_051373.1	0
Chromosome 17	BHWX01000017.1	=	NC_051374.1	0
Chromosome 18	BHWX01000018.1	=	NC_051375.1	0
Chromosome 19	BHWX01000019.1	=	NC_051376.1	0
Chromosome 20	BHWX01000020.1	=	NC_051377.1	0
Chromosome 21	BHWX01000021.1	=	NC_051378.1	0
Chromosome 22	BHWX01000022.1	=	NC_051379.1	0
Chromosome 23	BHWX01000023.1	=	NC_051380.1	0
Chromosome 24	BHWX01000024.1	=	NC_051381.1	0
Chromosome 25	BHWX01000025.1	=	NC_051382.1	0
Chromosome 26	BHWX01000026.1	=	NC_051383.1	0
Chromosome 27	BHWX01000027.1	=	NC_051384.1	0
Chromosome 28	BHWX01000028.1	=	NC_051385.1	0
unplaced	n/a	n/a	n/a	668

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	460,334,017	696	459,881,487	16,796,068	30
Chromosome 1	20,666,287	1	20,666,187	20,666,287	1
Chromosome 2	8,396,445	1	8,396,445	8,396,445	0
Chromosome 3	15,212,953	1	15,212,953	15,212,953	0
Chromosome 4	18,737,234	1	18,737,234	18,737,234	0
Chromosome 5	19,061,979	1	19,035,618	19,061,979	3
Chromosome 6	16,650,604	1	16,624,158	16,650,604	1
Chromosome 7	13,944,894	1	13,890,920	13,944,894	1
Chromosome 8	16,262,221	1	16,249,740	16,262,221	1
Chromosome 9	16,796,068	1	16,752,615	16,796,068	1
Chromosome 10	17,614,771	1	17,614,671	17,614,771	1
Chromosome 11	20,440,007	1	20,337,222	20,440,007	5
Chromosome 12	17,580,608	1	17,543,637	17,580,608	1
Chromosome 13	17,735,081	1	17,734,881	17,735,081	2
Chromosome 14	13,345,518	1	13,345,518	13,345,518	0
Chromosome 15	18,440,292	1	18,440,292	18,440,292	0
Chromosome 16	14,337,292	1	14,337,292	14,337,292	0
Chromosome 17	16,840,672	1	16,840,572	16,840,672	1
Chromosome 18	15,699,053	1	15,699,053	15,699,053	0
Chromosome 19	14,801,489	1	14,772,386	14,801,489	2
Chromosome 20	12,370,531	1	12,370,531	12,370,531	0
Chromosome 21	15,310,392	1	15,282,929	15,310,392	2
Chromosome 22	18,482,526	1	18,482,226	18,482,526	3
Chromosome 23	21,465,692	1	21,465,692	21,465,692	0
Chromosome 24	17,359,173	1	17,358,873	17,359,173	3
Chromosome 25	14,548,897	1	14,548,897	14,548,897	0
Chromosome 26	11,473,476	1	11,456,475	11,473,476	1
Chromosome 27	10,930,128	1	10,854,736	10,930,128	1
Chromosome 28	10,609,739	1	10,609,739	10,609,739	0
unplaced	15,219,995	668	15,219,995	21,743	0

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Bmori_2016v1.0

See Genome Information for Bombyx mori

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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