U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



VPISU_Cqui_1.0_pri_paternal

Organism name:
Culex quinquefasciatus (southern house mosquito)
Infraspecific name:
Strain: JHB
Sex:
male
BioSample:
SAMN15480861
BioProject:
PRJNA644878
Submitter:
None
Date:
2020/12/04
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015732765.1 (latest)
RefSeq assembly accession:
GCF_015732765.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JADDTP01
Assembly method:
canu v. 1.8
Expected final version:
yes
Genome coverage:
76.0x
Sequencing technology:
Oxford Nanopore MinION; Oxford Nanopore PromethION; Illumina; Bionano DLS; Hi-C; Oxford Nanopore Flongle
Linked assembly:
GCA_015732745.1 (alternate pseudohaplotype of diploid)

IDs: 8676511 [UID] 23531478 [GenBank] 23737088 [RefSeq]

See Genome Information for Culex quinquefasciatus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length573,230,032
Total ungapped length547,064,558
Gaps between scaffolds0
Number of scaffolds57
Scaffold N50201,550,677
Scaffold L502
Number of contigs4,009
Contig N502,875,282
Contig L5047
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)57

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_015732775.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM027410.1=NC_051861.10
Chromosome 2CM027411.1=NC_051862.10
Chromosome 3CM027412.1=NC_051863.10
unplacedn/an/an/a53

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All573,214,44556547,048,971201,550,6773,9520
Chromosome 1132,876,1671125,544,559132,876,1671,1820
Chromosome 2225,161,8401222,607,138225,161,8403910
Chromosome 3201,550,6771198,853,049201,550,6774360
unplaced13,625,7615344,2252,452,5121,9430
MoleculeTotal
Length
Mitochondrion MT15,587