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AgileGrace

Organism name:
Gracilinanus agilis (Agile Gracile Mouse Opossum)
Isolate:
LMUSP501
Sex:
male
BioSample:
SAMN16807781
BioProject:
PRJNA565840
Submitter:
Nanjing Normal University
Date:
2021/01/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016433145.1 (latest)
RefSeq assembly accession:
GCF_016433145.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JADWME01
Assembly method:
SOAPnuke v. 1.5; Supernova v. 2.1.1; Gapcloser v. 1.10
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
stLFR; BGISEQ-500; Hi-C

IDs: 9079371 [UID] 24462978 [GenBank] 29566608 [RefSeq]

See Genome Information for Gracilinanus agilis

History (Show revision history)

Comment

Global statistics

Total sequence length3,701,033,721
Total ungapped length3,395,603,041
Gaps between scaffolds0
Number of scaffolds60,714
Scaffold N50683,521,856
Scaffold L503
Number of contigs125,012
Contig N5073,170
Contig L5013,336
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)60,714

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016433155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028235.1=NC_058130.10
Chromosome 2CM028236.1=NC_058131.10
Chromosome 3CM028237.1=NC_058132.10
Chromosome 4CM028238.1=NC_058133.10
Chromosome 5CM028239.1=NC_058134.10
Chromosome 6CM028240.1=NC_058135.10
Chromosome XCM028241.1=NC_058136.10
unplacedn/an/an/a60,706

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,701,017,38560,7133,395,586,705683,521,85664,2980
Chromosome 1801,374,2651731,256,287801,374,26514,2990
Chromosome 2725,203,4071666,803,882725,203,40712,6730
Chromosome 3683,521,8561624,762,107683,521,85611,9180
Chromosome 4523,219,3411473,733,614523,219,3419,6400
Chromosome 5313,333,2761286,657,013313,333,2765,4230
Chromosome 6299,087,8441270,142,137299,087,8445,4980
Chromosome X82,251,158169,902,41482,251,1582,0320
unplaced273,026,23860,706272,329,2516,2222,8150
MoleculeTotal
Length
Mitochondrion MT16,336