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Fcat_Pben_1.1_paternal_pri

Organism name:
Prionailurus bengalensis (leopard cat)
Isolate:
Pbe53
Sex:
male
BioSample:
SAMN16486448
BioProject:
PRJNA682572
Submitter:
Texas A&M University
Date:
2021/01/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016509475.2 (latest)
RefSeq assembly accession:
GCF_016509475.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JADZGN01
Assembly method:
NextDenovo v. 2.2-beta.0
Expected final version:
yes
Reference guided assembly:
GCA_000181335.4
Genome coverage:
40.0x
Sequencing technology:
PacBio

IDs: 10600071 [UID] 28100568 [GenBank] 28628198 [RefSeq]

See Genome Information for Prionailurus bengalensis

There are 3 assemblies for this organism

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History (Show revision history)

Comment

This is the paternal pseudohaplotype assembly created from the genome sequence of the F1 female progeny (isolate LxD-97; BioSample SAMN16486446) of a cross between a female Felis catus (isolate Fca508; BioSample SAMN16486447) and male Prionailurus bengalensis (isolate Pbe53; BioSample SAMN16486448).

Global statistics

Total sequence length2,435,718,761
Total ungapped length2,435,706,361
Gaps between scaffolds0
Number of scaffolds84
Scaffold N50148,587,958
Scaffold L507
Number of contigs140
Contig N5082,622,880
Contig L5011
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)123

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016509485.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM028179.1=NC_057343.10
Chromosome B1CM028182.1=NC_057344.10
Chromosome C1CM028186.1=NC_057345.10
Chromosome D1CM028188.1=NC_057346.10
Chromosome E1CM028192.1=NC_057347.10
Chromosome A2CM028180.1=NC_057348.10
Chromosome B2CM028183.1=NC_057349.11
Chromosome C2CM028187.1=NC_057350.10
Chromosome D2CM028189.1=NC_057351.10
Chromosome E2CM028193.1=NC_057352.10
Chromosome F2CM028196.1=NC_057353.10
Chromosome A3CM028181.1=NC_057354.10
Chromosome B3CM028184.1=NC_057355.10
Chromosome D3CM028190.1=NC_057356.10
Chromosome E3CM028194.1=NC_057357.10
Chromosome B4CM028185.1=NC_057358.10
Chromosome D4CM028191.1=NC_057359.10
Chromosome E4CM028195.1=NC_057360.10
Chromosome XCM028178.1=NC_057361.10
unplacedn/an/an/a63

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,435,702,060832,435,689,660148,587,958560
Chromosome A1Assembled molecule240,846,7381240,846,738240,846,73800
Chromosome B1Assembled molecule206,580,4321206,579,832206,580,43220
Chromosome C1Assembled molecule222,814,6101222,814,410222,814,61020
Chromosome D1Assembled molecule116,110,3511116,110,051116,110,35130
Chromosome E1Assembled molecule61,174,949161,174,34961,174,94920
Chromosome A2Assembled molecule168,940,8501168,940,150168,940,85030
Chromosome B2AllAssembled moleculeUnlocalized scaffolds153,327,157152,385,405941,752211153,326,457152,385,205941,252152,385,405152,385,405941,752321000
Chromosome C2Assembled molecule159,850,2711159,849,971159,850,27130
Chromosome D2Assembled molecule87,619,889187,619,38987,619,88910
Chromosome E2Assembled molecule62,591,731162,591,63162,591,73110
Chromosome F2Assembled molecule83,696,601183,696,50183,696,60110
Chromosome A3Assembled molecule140,803,5471140,802,947140,803,54720
Chromosome B3Assembled molecule148,587,9581148,587,858148,587,95810
Chromosome D3Assembled molecule94,595,352194,594,25294,595,35270
Chromosome E3Assembled molecule41,869,280141,869,28041,869,28000
Chromosome B4Assembled molecule142,198,2311142,197,731142,198,23110
Chromosome D4Assembled molecule94,620,989194,620,48994,620,98910
Chromosome E4Assembled molecule69,230,405169,229,40569,230,40520
Chromosome XAssembled molecule129,104,4051129,100,905129,104,405190
unplacedAssembled molecule11,138,3146311,137,314251,74720
MoleculeTotal
Length
Mitochondrion MT16,701
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