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Prin_Dsan_1.0

Organism name:
Drosophila santomea (flies)
Infraspecific name:
Strain: STO CAGO 1482
Sex:
female
BioSample:
SAMN15573959
BioProject:
PRJNA647033
Submitter:
Princeton University
Date:
2021/01/25
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016746245.1 (replaced)
RefSeq assembly accession:
GCF_016746245.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAECZZ01
Assembly method:
FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d
Expected final version:
yes
Genome coverage:
103.0x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 9181981 [UID] 24715108 [GenBank] 25032748 [RefSeq]

See Genome Information for Drosophila santomea

History (Show revision history)

Comment

Global statistics

Total sequence length146,781,989
Total ungapped length146,780,589
Gaps between scaffolds0
Number of scaffolds104
Scaffold N5025,613,778
Scaffold L503
Number of contigs118
Contig N5010,765,631
Contig L504
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)104

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016746285.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM028588.1=NC_053016.10
Chromosome 2RCM028589.1=NC_053017.10
Chromosome 3LCM028590.1=NC_053018.10
Chromosome 3RCM028591.1=NC_053019.10
Chromosome 4CM028586.1=NC_053020.10
Chromosome XCM028587.1=NC_053021.10
unplacedn/an/an/a98

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All146,781,989104146,780,58925,613,778140
Chromosome 2L27,914,031127,913,63127,914,03140
Chromosome 2R22,645,789122,645,58922,645,78920
Chromosome 3L25,613,778125,613,47825,613,77830
Chromosome 3R29,036,999129,036,99929,036,99900
Chromosome 41,429,28811,429,2881,429,28800
Chromosome X22,630,658122,630,15822,630,65850
unplaced17,511,4469817,511,446718,78500