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Source database (GenBank or RefSeq) File type

AaraD3

Organism name:

Anopheles arabiensis (mosquitos)

Isolate:

DONGOLA

Sex:

male

BioSample:

SAMN14999448

BioProject:

PRJNA634549

Submitter:

Virginia Tech

Date:

2021/03/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016920715.1 (latest)

RefSeq assembly accession:

GCF_016920715.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

JADFTQ01

Assembly method:

Canu v. 1.8

Expected final version:

yes

Genome coverage:

114.0x

Sequencing technology:

Oxford Nanopore MinION

IDs: 9506261 [UID] 25500218 [GenBank] 25770008 [RefSeq]

See Genome Information for Anopheles arabiensis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016920715.1	≠	GCF_016920715.1	AaraD3	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	256,823,338
Total ungapped length	256,821,638
Gaps between scaffolds	0
Number of scaffolds	102
Scaffold N50	95,710,210
Scaffold L50	2
Number of contigs	119
Contig N50	23,935,993
Contig L50	4
Total number of chromosomes and plasmids	5
Number of component sequences (WGS or clone)	102

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome Y	n/a	n/a	n/a	4
Chromosome 2	CM029352.1	=	NC_053517.1	0
Chromosome 3	CM029353.1	=	NC_053518.1	0
Chromosome X	CM029354.1	=	NC_053519.1	70
unplaced	n/a	n/a	n/a	24

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	256,807,969	101	256,806,269	95,710,210	17	0
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	619,4780619,478	404	619,4780619,478	169,6520169,652	000	000
Chromosome 2	Assembled molecule	111,988,354	1	111,987,454	111,988,354	9	0
Chromosome 3	Assembled molecule	95,710,210	1	95,709,710	95,710,210	5	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	41,796,56226,913,13314,883,429	71170	41,796,26226,912,83314,883,429	26,913,13326,913,133397,713	330	000
unplaced	Assembled molecule	6,693,365	24	6,693,365	361,753	0	0

Assembly

Genome Assembly

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AaraD3

See Genome Information for Anopheles arabiensis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear