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Source database (GenBank or RefSeq) File type

GAculeatus_UGA_version5

Organism name:

Gasterosteus aculeatus aculeatus (three-spined stickleback)

Infraspecific name:

Strain: Lake Benthic

Sex:

male

BioSample:

SAMN15223905

BioProject:

PRJNA639125

Submitter:

University of Georgia

Date:

2021/02/23

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016920845.1 (latest)

RefSeq assembly accession:

GCF_016920845.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT
Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JACDQR01

Assembly method:

LRGapcloser v. 1

Expected final version:

yes

Reference guided assembly:

https://0-doi-org.brum.beds.ac.uk/10.5061/dryad.h7h32

Genome coverage:

75.0x

Sequencing technology:

PacBio

IDs: 9307941 [UID] 25056548 [GenBank] 25483328 [RefSeq]

See Genome Information for Gasterosteus aculeatus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016920845.1	≠	GCF_016920845.1	GAculeatus_UGA_version5	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	471,894,361
Total ungapped length	468,320,183
Gaps between scaffolds	0
Number of scaffolds	2,937
Scaffold N50	20,445,003
Scaffold L50	10
Number of contigs	6,059
Contig N50	485,752
Contig L50	253
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	2,937

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome I	CM029282.1	=	NC_053212.1	0
Chromosome II	CM029283.1	=	NC_053213.1	0
Chromosome III	CM029284.1	=	NC_053214.1	0
Chromosome IV	CM029285.1	=	NC_053215.1	0
Chromosome V	CM029286.1	=	NC_053216.1	0
Chromosome VI	CM029287.1	=	NC_053217.1	0
Chromosome VII	CM029288.1	=	NC_053218.1	0
Chromosome VIII	CM029289.1	=	NC_053219.1	0
Chromosome IX	CM029290.1	=	NC_053220.1	0
Chromosome X	CM029291.1	=	NC_053221.1	0
Chromosome XI	CM029292.1	=	NC_053222.1	0
Chromosome XII	CM029293.1	=	NC_053223.1	0
Chromosome XIII	CM029294.1	=	NC_053224.1	0
Chromosome XIV	CM029295.1	=	NC_053225.1	0
Chromosome XV	CM029296.1	=	NC_053226.1	0
Chromosome XVI	CM029298.1	=	NC_053227.1	0
Chromosome XVII	CM029299.1	=	NC_053228.1	0
Chromosome XVIII	CM029300.1	=	NC_053229.1	0
Chromosome XIX	CM029301.1	=	NC_053230.1	0
Chromosome XX	CM029302.1	=	NC_053231.1	0
Chromosome XXI	CM029303.1	=	NC_053232.1	0
Chromosome Y	CM029297.1	=	NC_053233.1	0
unplaced	n/a	n/a	n/a	2,914

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	471,877,818	2,936	468,303,640	20,445,003	3,122
Chromosome I	29,619,991	1	29,444,947	29,619,991	197
Chromosome II	23,686,546	1	23,574,041	23,686,546	120
Chromosome III	17,759,012	1	17,603,405	17,759,012	138
Chromosome IV	34,181,212	1	33,940,831	34,181,212	187
Chromosome V	15,550,311	1	15,437,578	15,550,311	137
Chromosome VI	18,825,451	1	18,724,670	18,825,451	98
Chromosome VII	30,776,923	1	30,549,185	30,776,923	244
Chromosome VIII	20,553,084	1	20,402,839	20,553,084	162
Chromosome IX	20,843,631	1	20,596,573	20,843,631	180
Chromosome X	17,985,176	1	17,761,329	17,985,176	158
Chromosome XI	17,651,971	1	17,534,868	17,651,971	138
Chromosome XII	20,694,444	1	20,493,767	20,694,444	182
Chromosome XIII	20,748,428	1	20,565,881	20,748,428	134
Chromosome XIV	16,147,532	1	16,034,810	16,147,532	103
Chromosome XV	17,318,724	1	17,269,685	17,318,724	85
Chromosome XVI	19,507,025	1	19,386,518	19,507,025	127
Chromosome XVII	20,195,758	1	20,110,205	20,195,758	90
Chromosome XVIII	15,939,336	1	15,782,550	15,939,336	99
Chromosome XIX	20,580,295	1	20,329,238	20,580,295	157
Chromosome XX	20,445,003	1	20,239,610	20,445,003	123
Chromosome XXI	17,421,465	1	17,099,877	17,421,465	212
Chromosome Y	15,859,692	1	15,834,425	15,859,692	51
unplaced	19,586,808	2,914	19,586,808	11,763	0

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GAculeatus_UGA_version5

See Genome Information for Gasterosteus aculeatus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear