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NIBS_Ocur_1.0

Organism name:
Ochotona curzoniae (black-lipped pika)
Isolate:
NIBS_2020
BioSample:
SAMN13876228
BioProject:
PRJNA601872
Submitter:
National Institute of Biological Sciences, Beijing
Date:
2021/03/26
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_017591425.1 (latest)
RefSeq assembly accession:
GCF_017591425.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
JAADBW01
Assembly method:
WTDBG2 v. 2.5; Flye v. 2.7; CANU v. 2.0
Expected final version:
no
Genome coverage:
165.0x
Sequencing technology:
PacBio Sequel

IDs: 9679301 [UID] 25887518 [GenBank] 26251688 [RefSeq]

See Genome Information for Ochotona curzoniae

History (Show revision history)

Comment

Global statistics

Total sequence length2,086,129,077
Total ungapped length2,086,122,269
Gaps between scaffolds0
Number of scaffolds2,214
Scaffold N5033,876,933
Scaffold L5021
Number of contigs2,267
Contig N5029,562,832
Contig L5023
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)2,214

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,086,111,9462,2132,086,105,13833,876,933530
MoleculeTotal
Length
Mitochondrion MT17,131