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BCM_Maur_2.0

Organism name:
Mesocricetus auratus (golden hamster)
Isolate:
SY011
Sex:
female
BioSample:
SAMN18096087
BioProject:
PRJNA705675
Submitter:
Baylor College of Medicine Human Genome Sequencing Center
Date:
2021/03/30
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_017639785.1 (latest)
RefSeq assembly accession:
GCF_017639785.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAFVMI01
Assembly method:
Flye v. 2.8.1-b1676; Pilon v. 1.23; Bionano Solve v. 3.4
Expected final version:
no
Genome coverage:
88.0x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 9679381 [UID] 25887768 [GenBank] 26024088 [RefSeq]

See Genome Information for Mesocricetus auratus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,457,078,271
Total ungapped length2,383,228,883
Gaps between scaffolds0
Number of scaffolds6,347
Scaffold N5085,184,847
Scaffold L5011
Number of contigs7,058
Contig N509,471,653
Contig L5075
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)7,058

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,457,062,0076,3462,383,212,61985,184,8477110
MoleculeTotal
Length
Mitochondrion MT16,264