Format

Send to:

Choose Destination

Download Assembly



Xenopus_laevis_v10.1

Organism name:
Xenopus laevis (African clawed frog)
Infraspecific name:
Strain: J_2021
Sex:
female
BioSample:
SAMN18035302
BioProject:
PRJNA313213
Submitter:
International Xenopus Sequencing Consortium
Date:
2021/04/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_017654675.1 (latest)
RefSeq assembly accession:
GCF_017654675.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JAGEVR01
Assembly method:
Canu v. 1.6-132-gf9284f8
Expected final version:
yes
Genome coverage:
28.5x
Sequencing technology:
PacBio RSII

IDs: 9809711 [UID] 26202298 [GenBank] 26275468 [RefSeq]

See Genome Information for Xenopus laevis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,742,469,346
Total ungapped length2,740,794,654
Gaps between scaffolds0
Number of scaffolds55
Scaffold N50155,250,555
Scaffold L508
Number of contigs716
Contig N5022,451,507
Contig L5035
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)55

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_017654685.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LCM030340.1=NC_054371.10
Chromosome 1SCM030341.1=NC_054372.10
Chromosome 2LCM030342.1=NC_054373.10
Chromosome 2SCM030343.1=NC_054374.10
Chromosome 3LCM030344.1=NC_054375.10
Chromosome 3SCM030345.1=NC_054376.10
Chromosome 4LCM030346.1=NC_054377.10
Chromosome 4SCM030347.1=NC_054378.10
Chromosome 5LCM030348.1=NC_054379.10
Chromosome 5SCM030349.1=NC_054380.10
Chromosome 6LCM030350.1=NC_054381.10
Chromosome 6SCM030351.1=NC_054382.10
Chromosome 7LCM030352.1=NC_054383.10
Chromosome 7SCM030353.1=NC_054384.10
Chromosome 8LCM030354.1=NC_054385.10
Chromosome 8SCM030355.1=NC_054386.10
Chromosome 9_10LCM030356.1=NC_054387.10
Chromosome 9_10SCM030357.1=NC_054388.10
unplacedn/an/an/a36

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,742,451,793542,740,777,101155,250,5556610
Chromosome 1L233,740,0911233,684,759233,740,091160
Chromosome 1S202,412,9711202,333,244202,412,971480
Chromosome 2L191,000,1471190,950,047191,000,147330
Chromosome 2S169,306,1011169,165,300169,306,101500
Chromosome 3L161,426,1021161,218,021161,426,1021010
Chromosome 3S131,962,8171131,884,245131,962,817140
Chromosome 4L155,250,5551155,232,162155,250,555140
Chromosome 4S132,731,1751132,670,851132,731,175230
Chromosome 5L171,415,3851171,318,296171,415,385390
Chromosome 5S143,394,1041143,271,766143,394,104360
Chromosome 6L164,223,5961164,144,923164,223,596290
Chromosome 6S137,316,2871137,273,312137,316,287260
Chromosome 7L139,837,6191139,666,372139,837,619500
Chromosome 7S113,060,3901112,926,951113,060,390580
Chromosome 8L135,449,1341135,360,090135,449,134390
Chromosome 8S103,977,8631103,940,943103,977,863180
Chromosome 9_10L137,811,8201137,669,340137,811,820420
Chromosome 9_10S117,266,2921117,197,135117,266,292250
unplaced869,34436869,34436,35900
MoleculeTotal
Length
Mitochondrion MT17,553
Support Center