Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Lvar_3.0

Organism name:

Lytechinus variegatus (green sea urchin)

Isolate:

NC3

Sex:

female

BioSample:

SAMN15823010

BioProject:

PRJNA657258

Submitter:

Duke University

Date:

2021/04/29

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018143015.1 (latest)

RefSeq assembly accession:

GCF_018143015.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAFCXN01

Assembly method:

Canu v. 1.8

Expected final version:

yes

Genome coverage:

130.0x

Sequencing technology:

PacBio Sequel; BGISEQ500

IDs: 9964291 [UID] 26536068 [GenBank] 26697328 [RefSeq]

See Genome Information for Lytechinus variegatus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018143015.1	≠	GCF_018143015.1	Lvar_3.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	869,598,128
Total ungapped length	869,417,128
Gaps between scaffolds	0
Number of scaffolds	33
Scaffold N50	45,571,165
Scaffold L50	7
Number of contigs	395
Contig N50	5,852,084
Contig L50	44
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	33

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM031015.1	=	NC_054740.1	0
Chromosome 2	CM031016.1	=	NC_054741.1	0
Chromosome 3	CM031017.1	=	NC_054742.1	0
Chromosome 4	CM031018.1	=	NC_054743.1	0
Chromosome 5	CM031019.1	=	NC_054744.1	0
Chromosome 6	CM031020.1	=	NC_054745.1	0
Chromosome 7	CM031021.1	=	NC_054746.1	0
Chromosome 8	CM031022.1	=	NC_054747.1	0
Chromosome 9	CM031023.1	=	NC_054748.1	0
Chromosome 10	CM031024.1	=	NC_054749.1	0
Chromosome 11	CM031025.1	=	NC_054750.1	0
Chromosome 12	CM031026.1	=	NC_054751.1	0
Chromosome 13	CM031027.1	=	NC_054752.1	0
Chromosome 14	CM031028.1	=	NC_054753.1	0
Chromosome 15	CM031029.1	=	NC_054754.1	0
Chromosome 16	CM031030.1	=	NC_054755.1	0
Chromosome 17	CM031031.1	=	NC_054756.1	0
Chromosome 18	CM031032.1	=	NC_054757.1	0
Chromosome 19	CM031033.1	=	NC_054758.1	0
unplaced	n/a	n/a	n/a	13

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	869,582,435	32	869,401,435	45,571,165	362
Chromosome 1	96,709,854	1	96,682,854	96,709,854	54
Chromosome 2	84,616,143	1	84,606,143	84,616,143	20
Chromosome 3	75,777,787	1	75,752,287	75,777,787	51
Chromosome 4	66,439,262	1	66,419,262	66,439,262	40
Chromosome 5	48,679,898	1	48,673,898	48,679,898	12
Chromosome 6	47,823,793	1	47,812,793	47,823,793	22
Chromosome 7	45,571,165	1	45,563,165	45,571,165	16
Chromosome 8	43,542,320	1	43,534,320	43,542,320	16
Chromosome 9	38,545,042	1	38,534,542	38,545,042	21
Chromosome 10	36,689,291	1	36,682,791	36,689,291	13
Chromosome 11	36,215,758	1	36,212,758	36,215,758	6
Chromosome 12	35,849,951	1	35,836,451	35,849,951	27
Chromosome 13	35,476,162	1	35,473,662	35,476,162	5
Chromosome 14	33,697,906	1	33,692,906	33,697,906	10
Chromosome 15	33,098,554	1	33,089,554	33,098,554	18
Chromosome 16	31,652,786	1	31,647,286	31,652,786	11
Chromosome 17	31,190,146	1	31,181,646	31,190,146	17
Chromosome 18	24,540,590	1	24,539,090	24,540,590	3
Chromosome 19	23,402,679	1	23,402,679	23,402,679	0
unplaced	63,348	13	63,348	5,774	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Lvar_3.0

See Genome Information for Lytechinus variegatus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear