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Source database (GenBank or RefSeq) File type

ASM1834538v1

Organism name:

Vulpes lagopus (Arctic fox)

Infraspecific name:

Strain: Blue_001

Sex:

female

BioSample:

SAMN16815335

BioProject:

PRJNA678849

Submitter:

Hebei Normal University of Science and Technology

Date:

2021/05/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018345385.1 (latest)

RefSeq assembly accession:

GCF_018345385.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADWOQ01

Assembly method:

WTDBG2 v. 2.5

Expected final version:

yes

Genome coverage:

121.0x

Sequencing technology:

PacBio Sequel; Illumina NovaSeq

IDs: 10038191 [UID] 26697278 [GenBank] 26784078 [RefSeq]

See Genome Information for Vulpes lagopus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018345385.1	≠	GCF_018345385.1	ASM1834538v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,345,550,353
Total ungapped length	2,345,497,653
Gaps between scaffolds	0
Number of scaffolds	929
Scaffold N50	131,537,142
Scaffold L50	8
Number of contigs	1,456
Contig N50	33,460,300
Contig L50	24
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	929

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM031295.1	=	NC_054824.1	0
Chromosome 2	CM031296.1	=	NC_054825.1	0
Chromosome 3	CM031297.1	=	NC_054826.1	0
Chromosome 4	CM031298.1	=	NC_054827.1	0
Chromosome 5	CM031299.1	=	NC_054828.1	0
Chromosome 6	CM031300.1	=	NC_054829.1	0
Chromosome 7	CM031301.1	=	NC_054830.1	0
Chromosome 8	CM031302.1	=	NC_054831.1	0
Chromosome 9	CM031303.1	=	NC_054832.1	0
Chromosome 10	CM031304.1	=	NC_054833.1	0
Chromosome 11	CM031305.1	=	NC_054834.1	0
Chromosome 12	CM031306.1	=	NC_054835.1	0
Chromosome 13	CM031307.1	=	NC_054836.1	0
Chromosome 14	CM031308.1	=	NC_054837.1	0
Chromosome 15	CM031309.1	=	NC_054838.1	0
Chromosome 16	CM031310.1	=	NC_054839.1	0
Chromosome 17	CM031311.1	=	NC_054840.1	0
Chromosome 18	CM031312.1	=	NC_054841.1	0
Chromosome 19	CM031313.1	=	NC_054842.1	0
Chromosome 20	CM031314.1	=	NC_054843.1	0
Chromosome 21	CM031315.1	=	NC_054844.1	0
Chromosome 22	CM031316.1	=	NC_054845.1	0
Chromosome 23	CM031317.1	=	NC_054846.1	0
Chromosome 24	CM031318.1	=	NC_054847.1	0
Chromosome X	CM031319.1	=	NC_054848.1	0
unplaced	n/a	n/a	n/a	903

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,345,533,697	928	2,345,480,997	131,537,142	527
Chromosome 1	185,858,810	1	185,856,410	185,858,810	24
Chromosome 2	179,392,307	1	179,390,407	179,392,307	19
Chromosome 3	165,896,947	1	165,895,547	165,896,947	14
Chromosome 4	152,262,376	1	152,257,076	152,262,376	53
Chromosome 5	133,752,869	1	133,749,769	133,752,869	31
Chromosome 6	134,369,658	1	134,365,958	134,369,658	37
Chromosome 7	131,537,142	1	131,533,942	131,537,142	32
Chromosome 8	134,802,612	1	134,799,312	134,802,612	33
Chromosome 9	79,896,057	1	79,894,757	79,896,057	13
Chromosome 10	116,667,819	1	116,666,219	116,667,819	16
Chromosome 11	110,416,569	1	110,415,469	110,416,569	11
Chromosome 12	85,158,611	1	85,157,011	85,158,611	16
Chromosome 13	61,874,436	1	61,872,336	61,874,436	21
Chromosome 14	36,869,561	1	36,868,461	36,869,561	11
Chromosome 15	49,724,982	1	49,723,682	49,724,982	13
Chromosome 16	61,660,527	1	61,660,327	61,660,527	2
Chromosome 17	43,373,092	1	43,367,292	43,373,092	58
Chromosome 18	47,776,360	1	47,775,060	47,776,360	13
Chromosome 19	53,525,694	1	53,523,694	53,525,694	20
Chromosome 20	38,527,745	1	38,527,645	38,527,745	1
Chromosome 21	45,733,283	1	45,731,683	45,733,283	16
Chromosome 22	31,001,585	1	31,001,485	31,001,585	1
Chromosome 23	63,748,409	1	63,747,709	63,748,409	7
Chromosome 24	58,817,156	1	58,816,956	58,817,156	2
Chromosome X	123,040,549	1	123,034,249	123,040,549	63
unplaced	19,848,541	903	19,848,541	32,134	0

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ASM1834538v1

See Genome Information for Vulpes lagopus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear