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F.catus_Fca126_mat1.0

Organism name:
Felis catus (domestic cat)
Isolate:
Fca126
Sex:
female
BioSample:
SAMN19729387
BioProject:
PRJNA684600
Submitter:
Texas A&M University
Date:
2021/05/13
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018350175.1 (latest)
RefSeq assembly accession:
GCF_018350175.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAFEKA01
Assembly method:
NextDenovo v. 2.2-beta.0
Expected final version:
yes
Reference guided assembly:
GCA_016509815.1
Genome coverage:
76.0x
Sequencing technology:
PacBio Sequel 2
Linked assembly:
GCF_018350155.1 (alternate pseudohaplotype of diploid)

IDs: 10039141 [UID] 26707928 [GenBank] 29725788 [RefSeq]

See Genome Information for Felis catus

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

This is the maternal pseudohaplotype assembly created from the genome sequence of the F1 female progeny (isolate GxD-2; BioSample SAMN17062193) of a cross between a female Felis catus (isolate Fca126; BioSample SAMN19729387) and male Leopardus geoffroyi (isolate Oge1; BioSample SAMN19729386).

Global statistics

Total sequence length2,425,747,038
Total ungapped length2,425,739,938
Gaps between scaffolds0
Number of scaffolds71
Scaffold N50148,491,486
Scaffold L507
Number of contigs110
Contig N5090,731,473
Contig L5010
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)102

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_018350185.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM031412.1=NC_058368.10
Chromosome A2CM031413.1=NC_058369.17
Chromosome A3CM031414.1=NC_058370.10
Chromosome B1CM031415.1=NC_058371.11
Chromosome B2CM031416.1=NC_058372.11
Chromosome B3CM031417.1=NC_058373.10
Chromosome B4CM031418.1=NC_058374.10
Chromosome C1CM031419.1=NC_058375.10
Chromosome C2CM031420.1=NC_058376.12
Chromosome D1CM031421.1=NC_058377.10
Chromosome D2CM031422.1=NC_058378.14
Chromosome D3CM031423.1=NC_058379.13
Chromosome D4CM031424.1=NC_058380.15
Chromosome E1CM031425.1=NC_058381.11
Chromosome E2CM031426.1=NC_058382.11
Chromosome E3CM031427.1=NC_058383.10
Chromosome F1CM031428.1=NC_058384.13
Chromosome F2CM031429.1=NC_058385.10
Chromosome XCM031411.1=NC_058386.111
unplacedn/an/an/a12

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,425,730,029702,425,722,929148,491,486390
Chromosome A1Assembled molecule239,367,2481239,367,148239,367,24810
Chromosome A2AllAssembled moleculeUnlocalized scaffolds171,272,311169,388,8551,883,456817171,271,211169,387,7551,883,456169,388,855169,388,855441,005770000
Chromosome A3Assembled molecule140,443,2881140,443,288140,443,28800
Chromosome B1AllAssembled moleculeUnlocalized scaffolds205,435,306205,367,28468,022211205,435,106205,367,08468,022205,367,284205,367,28468,022220000
Chromosome B2AllAssembled moleculeUnlocalized scaffolds152,227,353151,959,158268,195211152,227,353151,959,158268,195151,959,158151,959,158268,195000000
Chromosome B3Assembled molecule148,491,4861148,490,386148,491,48630
Chromosome B4Assembled molecule142,168,5361142,168,536142,168,53600
Chromosome C1Assembled molecule221,611,3731221,611,073221,611,37330
Chromosome C2AllAssembled moleculeUnlocalized scaffolds158,966,172158,578,461387,711312158,966,072158,578,361387,711158,578,461158,578,461256,771110000
Chromosome D1Assembled molecule115,366,9501115,366,450115,366,95010
Chromosome D2AllAssembled moleculeUnlocalized scaffolds88,934,97488,083,857851,11751488,934,97488,083,857851,11788,083,85788,083,857262,868000000
Chromosome D3AllAssembled moleculeUnlocalized scaffolds94,849,57594,435,393414,18241394,849,27594,435,093414,18294,435,39394,435,393261,704330000
Chromosome D4AllAssembled moleculeUnlocalized scaffolds95,846,88595,154,158692,72761595,846,68595,153,958692,72795,154,15895,154,158165,734220000
Chromosome E1AllAssembled moleculeUnlocalized scaffolds61,939,83161,876,19663,63521161,939,43161,875,79663,63561,876,19661,876,19663,635440000
Chromosome E2AllAssembled moleculeUnlocalized scaffolds62,200,67061,988,844211,82621162,200,57061,988,744211,82661,988,84461,988,844211,826110000
Chromosome E3Assembled molecule41,437,797141,437,69741,437,79710
Chromosome F1AllAssembled moleculeUnlocalized scaffolds70,325,32969,239,6731,085,65641370,325,22969,239,5731,085,65669,239,67369,239,673878,468110000
Chromosome F2Assembled molecule83,466,477183,466,47783,466,47700
Chromosome XAllAssembled moleculeUnlocalized scaffolds128,821,814127,842,892978,92212111128,819,314127,840,392978,922127,842,892127,842,892123,358990000
unplacedAssembled molecule2,556,654122,556,654218,13600
MoleculeTotal
Length
Mitochondrion MT17,009